Results 81 - 100 of 149 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28163 | 5' | -55.4 | NC_005887.1 | + | 34570 | 0.7 | 0.419475 |
Target: 5'- aUGUCGaucguCGCGUucACGUaGCAGCCg -3' miRNA: 3'- gACAGCgauu-GCGCG--UGCAgCGUCGG- -5' |
|||||||
28163 | 5' | -55.4 | NC_005887.1 | + | 32578 | 0.7 | 0.429125 |
Target: 5'- -aGU-GCgUGACGCGCAUGUuccagugcacgUGCAGCCc -3' miRNA: 3'- gaCAgCG-AUUGCGCGUGCA-----------GCGUCGG- -5' |
|||||||
28163 | 5' | -55.4 | NC_005887.1 | + | 28288 | 0.7 | 0.429125 |
Target: 5'- ---aCGCcgAGCGCGCgcaGCGUCGUGGCg -3' miRNA: 3'- gacaGCGa-UUGCGCG---UGCAGCGUCGg -5' |
|||||||
28163 | 5' | -55.4 | NC_005887.1 | + | 7840 | 0.69 | 0.438905 |
Target: 5'- -gGUCGC-AGCGacaGCACGUCG-AGCa -3' miRNA: 3'- gaCAGCGaUUGCg--CGUGCAGCgUCGg -5' |
|||||||
28163 | 5' | -55.4 | NC_005887.1 | + | 29474 | 0.69 | 0.438905 |
Target: 5'- -cGUCGUggAugGacaGCACGaugUCGUAGCCg -3' miRNA: 3'- gaCAGCGa-UugCg--CGUGC---AGCGUCGG- -5' |
|||||||
28163 | 5' | -55.4 | NC_005887.1 | + | 40271 | 0.69 | 0.438905 |
Target: 5'- gCUGcCGCUGGcCG-GCAaGUCGguGCCg -3' miRNA: 3'- -GACaGCGAUU-GCgCGUgCAGCguCGG- -5' |
|||||||
28163 | 5' | -55.4 | NC_005887.1 | + | 9805 | 0.69 | 0.457832 |
Target: 5'- -aGUgGgUGAuugggccCGCGaaCGCGUCGCAGCCg -3' miRNA: 3'- gaCAgCgAUU-------GCGC--GUGCAGCGUCGG- -5' |
|||||||
28163 | 5' | -55.4 | NC_005887.1 | + | 14495 | 0.66 | 0.631409 |
Target: 5'- --aUCGCgguUGCGCGCGUCGgGuCCg -3' miRNA: 3'- gacAGCGauuGCGCGUGCAGCgUcGG- -5' |
|||||||
28163 | 5' | -55.4 | NC_005887.1 | + | 4348 | 0.66 | 0.620242 |
Target: 5'- aUGUCGaccuCGCGCGCGaucaUCG-GGCCg -3' miRNA: 3'- gACAGCgauuGCGCGUGC----AGCgUCGG- -5' |
|||||||
28163 | 5' | -55.4 | NC_005887.1 | + | 11521 | 0.66 | 0.620242 |
Target: 5'- uUGuUCGCgagcuGCGCGUugcgauccAUGaUCGCGGCCu -3' miRNA: 3'- gAC-AGCGau---UGCGCG--------UGC-AGCGUCGG- -5' |
|||||||
28163 | 5' | -55.4 | NC_005887.1 | + | 10013 | 0.66 | 0.620242 |
Target: 5'- -aGUCGUauuUGAaauCGCGCAgcUUGCGGCCg -3' miRNA: 3'- gaCAGCG---AUU---GCGCGUgcAGCGUCGG- -5' |
|||||||
28163 | 5' | -55.4 | NC_005887.1 | + | 2966 | 0.66 | 0.609086 |
Target: 5'- -cGUCGUUcgcggcggccGACGUGUcCGUCGUcGCCu -3' miRNA: 3'- gaCAGCGA----------UUGCGCGuGCAGCGuCGG- -5' |
|||||||
28163 | 5' | -55.4 | NC_005887.1 | + | 9062 | 0.66 | 0.642576 |
Target: 5'- -cGUCGU---CGCGCuuGUgCGCAGCa -3' miRNA: 3'- gaCAGCGauuGCGCGugCA-GCGUCGg -5' |
|||||||
28163 | 5' | -55.4 | NC_005887.1 | + | 704 | 0.66 | 0.642576 |
Target: 5'- -cGUgCGCUcgcCGCGCGCuuucaUCGCGGCUu -3' miRNA: 3'- gaCA-GCGAuu-GCGCGUGc----AGCGUCGG- -5' |
|||||||
28163 | 5' | -55.4 | NC_005887.1 | + | 40227 | 0.66 | 0.642576 |
Target: 5'- -cGUCGCgcagcucacACGCggcgaGCGCGgcgCGCAGCg -3' miRNA: 3'- gaCAGCGau-------UGCG-----CGUGCa--GCGUCGg -5' |
|||||||
28163 | 5' | -55.4 | NC_005887.1 | + | 27110 | 0.66 | 0.653733 |
Target: 5'- -aGUCggGCggcAGCGUGCGCGgUCGCGcgcucGCCg -3' miRNA: 3'- gaCAG--CGa--UUGCGCGUGC-AGCGU-----CGG- -5' |
|||||||
28163 | 5' | -55.4 | NC_005887.1 | + | 41275 | 0.66 | 0.653733 |
Target: 5'- -gGUCacggGCacgacGACGCGCGgGUCggauGCAGCCa -3' miRNA: 3'- gaCAG----CGa----UUGCGCGUgCAG----CGUCGG- -5' |
|||||||
28163 | 5' | -55.4 | NC_005887.1 | + | 30828 | 0.66 | 0.653733 |
Target: 5'- --cUCGCc-GCGCGCACGgUCG-AGCUg -3' miRNA: 3'- gacAGCGauUGCGCGUGC-AGCgUCGG- -5' |
|||||||
28163 | 5' | -55.4 | NC_005887.1 | + | 6461 | 0.66 | 0.653733 |
Target: 5'- uUGUCGaCUucCGCGUACGcuucgaGCAuGCCg -3' miRNA: 3'- gACAGC-GAuuGCGCGUGCag----CGU-CGG- -5' |
|||||||
28163 | 5' | -55.4 | NC_005887.1 | + | 14896 | 0.74 | 0.23082 |
Target: 5'- ---cCGCgAACGUGCccgccaucaGCGUCGCGGCCg -3' miRNA: 3'- gacaGCGaUUGCGCG---------UGCAGCGUCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home