miRNA display CGI


Results 41 - 60 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28163 5' -55.4 NC_005887.1 + 23662 0.68 0.51066
Target:  5'- -cGUCGgauACGgucaGCGCGUCGUAGUCg -3'
miRNA:   3'- gaCAGCgauUGCg---CGUGCAGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 30344 0.67 0.586845
Target:  5'- -cGUCGU--GCGCgGCACGaucgUCGC-GCCg -3'
miRNA:   3'- gaCAGCGauUGCG-CGUGC----AGCGuCGG- -5'
28163 5' -55.4 NC_005887.1 + 30828 0.66 0.653733
Target:  5'- --cUCGCc-GCGCGCACGgUCG-AGCUg -3'
miRNA:   3'- gacAGCGauUGCGCGUGC-AGCgUCGG- -5'
28163 5' -55.4 NC_005887.1 + 27410 0.68 0.521323
Target:  5'- uCUG-CGCgc-CGCuGCGCGUggCGCAGUCg -3'
miRNA:   3'- -GACaGCGauuGCG-CGUGCA--GCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 6461 0.66 0.653733
Target:  5'- uUGUCGaCUucCGCGUACGcuucgaGCAuGCCg -3'
miRNA:   3'- gACAGC-GAuuGCGCGUGCag----CGU-CGG- -5'
28163 5' -55.4 NC_005887.1 + 14453 0.72 0.314616
Target:  5'- -gGUCGUacGCGCGCGCGccgaGCGGCg -3'
miRNA:   3'- gaCAGCGauUGCGCGUGCag--CGUCGg -5'
28163 5' -55.4 NC_005887.1 + 27110 0.66 0.653733
Target:  5'- -aGUCggGCggcAGCGUGCGCGgUCGCGcgcucGCCg -3'
miRNA:   3'- gaCAG--CGa--UUGCGCGUGC-AGCGU-----CGG- -5'
28163 5' -55.4 NC_005887.1 + 12670 0.71 0.355773
Target:  5'- uCUG-CGUcAGCaCGCcgaGCGUCGCGGCCg -3'
miRNA:   3'- -GACaGCGaUUGcGCG---UGCAGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 12491 0.7 0.39133
Target:  5'- --aUCGCgauCGCGCGCG-CGCGGUg -3'
miRNA:   3'- gacAGCGauuGCGCGUGCaGCGUCGg -5'
28163 5' -55.4 NC_005887.1 + 11801 0.69 0.45884
Target:  5'- gCUGUUGCgugcauucguGCGCGCcguGCG-CGCGGCg -3'
miRNA:   3'- -GACAGCGau--------UGCGCG---UGCaGCGUCGg -5'
28163 5' -55.4 NC_005887.1 + 4830 0.69 0.468987
Target:  5'- -cGUCaGCUuccCGCGCuCGUCGCAaaagcaccGCCg -3'
miRNA:   3'- gaCAG-CGAuu-GCGCGuGCAGCGU--------CGG- -5'
28163 5' -55.4 NC_005887.1 + 40940 0.68 0.489617
Target:  5'- -cGUCGCguuucuucuucGACGCGCGCG--GCGGCUu -3'
miRNA:   3'- gaCAGCGa----------UUGCGCGUGCagCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 28359 0.68 0.51066
Target:  5'- -aGUCGCcacGACGCuGCGCG-CGCucggcguGCCg -3'
miRNA:   3'- gaCAGCGa--UUGCG-CGUGCaGCGu------CGG- -5'
28163 5' -55.4 NC_005887.1 + 1211 0.68 0.542898
Target:  5'- -cGUCagaucCUucACGCGCACG-CGCGGCUu -3'
miRNA:   3'- gaCAGc----GAu-UGCGCGUGCaGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 8949 0.67 0.550521
Target:  5'- -gGUcCGCgAGCGCGUacgGCGUCGCGaucucgacgggcgcGCCg -3'
miRNA:   3'- gaCA-GCGaUUGCGCG---UGCAGCGU--------------CGG- -5'
28163 5' -55.4 NC_005887.1 + 10205 0.67 0.565859
Target:  5'- -cGUCGCUccggccggcuucuuCGuCGUACGU-GCAGCCg -3'
miRNA:   3'- gaCAGCGAuu------------GC-GCGUGCAgCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 13499 0.67 0.575778
Target:  5'- -cGU-GCUGAgcggUGCGCcgcuCGUCGCAGCa -3'
miRNA:   3'- gaCAgCGAUU----GCGCGu---GCAGCGUCGg -5'
28163 5' -55.4 NC_005887.1 + 14690 0.67 0.59795
Target:  5'- gCUGcCGUgAGCGCGCccucgacgGCGcCGaCGGCCg -3'
miRNA:   3'- -GACaGCGaUUGCGCG--------UGCaGC-GUCGG- -5'
28163 5' -55.4 NC_005887.1 + 10013 0.66 0.620242
Target:  5'- -aGUCGUauuUGAaauCGCGCAgcUUGCGGCCg -3'
miRNA:   3'- gaCAGCG---AUU---GCGCGUgcAGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 9062 0.66 0.642576
Target:  5'- -cGUCGU---CGCGCuuGUgCGCAGCa -3'
miRNA:   3'- gaCAGCGauuGCGCGugCA-GCGUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.