miRNA display CGI


Results 61 - 80 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28163 5' -55.4 NC_005887.1 + 2966 0.66 0.609086
Target:  5'- -cGUCGUUcgcggcggccGACGUGUcCGUCGUcGCCu -3'
miRNA:   3'- gaCAGCGA----------UUGCGCGuGCAGCGuCGG- -5'
28163 5' -55.4 NC_005887.1 + 12670 0.71 0.355773
Target:  5'- uCUG-CGUcAGCaCGCcgaGCGUCGCGGCCg -3'
miRNA:   3'- -GACaGCGaUUGcGCG---UGCAGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 32578 0.7 0.429125
Target:  5'- -aGU-GCgUGACGCGCAUGUuccagugcacgUGCAGCCc -3'
miRNA:   3'- gaCAgCG-AUUGCGCGUGCA-----------GCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 28288 0.7 0.429125
Target:  5'- ---aCGCcgAGCGCGCgcaGCGUCGUGGCg -3'
miRNA:   3'- gacaGCGa-UUGCGCG---UGCAGCGUCGg -5'
28163 5' -55.4 NC_005887.1 + 24203 0.74 0.249829
Target:  5'- gUGUUGCcGACGUGCGUGUUGCcaAGCCg -3'
miRNA:   3'- gACAGCGaUUGCGCGUGCAGCG--UCGG- -5'
28163 5' -55.4 NC_005887.1 + 29474 0.69 0.438905
Target:  5'- -cGUCGUggAugGacaGCACGaugUCGUAGCCg -3'
miRNA:   3'- gaCAGCGa-UugCg--CGUGC---AGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 14382 0.67 0.59795
Target:  5'- -aGUCGCcgcucGGCGCGCGCG-CGUAcGaCCu -3'
miRNA:   3'- gaCAGCGa----UUGCGCGUGCaGCGU-C-GG- -5'
28163 5' -55.4 NC_005887.1 + 40271 0.69 0.438905
Target:  5'- gCUGcCGCUGGcCG-GCAaGUCGguGCCg -3'
miRNA:   3'- -GACaGCGAUU-GCgCGUgCAGCguCGG- -5'
28163 5' -55.4 NC_005887.1 + 7840 0.69 0.438905
Target:  5'- -gGUCGC-AGCGacaGCACGUCG-AGCa -3'
miRNA:   3'- gaCAGCGaUUGCg--CGUGCAGCgUCGg -5'
28163 5' -55.4 NC_005887.1 + 8321 0.67 0.569161
Target:  5'- aUGgacgCGCUGuuucgcgaggcauucGCGUGC-CGUCugGCGGCCg -3'
miRNA:   3'- gACa---GCGAU---------------UGCGCGuGCAG--CGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 12429 0.67 0.575778
Target:  5'- ---cCGC-GGCGCGCGCGaUCGCgauggacccgAGCCu -3'
miRNA:   3'- gacaGCGaUUGCGCGUGC-AGCG----------UCGG- -5'
28163 5' -55.4 NC_005887.1 + 27337 0.67 0.586845
Target:  5'- -cGUCGacuGCGC-CACG-CGCAGCg -3'
miRNA:   3'- gaCAGCgauUGCGcGUGCaGCGUCGg -5'
28163 5' -55.4 NC_005887.1 + 37775 0.67 0.586845
Target:  5'- -cGUCGUU-GCGCgGCAUGgaaaGCAGCUc -3'
miRNA:   3'- gaCAGCGAuUGCG-CGUGCag--CGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 17166 0.67 0.586845
Target:  5'- --aUCGCgaggcgugggAGCGCGCGaa-CGCGGCCg -3'
miRNA:   3'- gacAGCGa---------UUGCGCGUgcaGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 11106 0.67 0.59795
Target:  5'- --aUCgGCUggUGCGCGCGaaGCuGGCCg -3'
miRNA:   3'- gacAG-CGAuuGCGCGUGCagCG-UCGG- -5'
28163 5' -55.4 NC_005887.1 + 24236 0.67 0.59795
Target:  5'- aUG-CGCUGcuggccACGUGC-CGgcaGCAGCCa -3'
miRNA:   3'- gACaGCGAU------UGCGCGuGCag-CGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 1228 0.66 0.607971
Target:  5'- uCUGgcgggCGCUGcgcggcgcucagcACGCGaaaACGUCGCAuaGCUa -3'
miRNA:   3'- -GACa----GCGAU-------------UGCGCg--UGCAGCGU--CGG- -5'
28163 5' -55.4 NC_005887.1 + 20959 0.67 0.575778
Target:  5'- uUGcUCGCUGuuccCGCGCugG-CGCuuggcGCCa -3'
miRNA:   3'- gAC-AGCGAUu---GCGCGugCaGCGu----CGG- -5'
28163 5' -55.4 NC_005887.1 + 8082 0.71 0.373264
Target:  5'- -gGUCGUUcACgaaaGCGCGCG-CGCAGCUc -3'
miRNA:   3'- gaCAGCGAuUG----CGCGUGCaGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 24935 0.71 0.347246
Target:  5'- uUGUCGaucgcGACGCGUGCG-CGCgGGCCg -3'
miRNA:   3'- gACAGCga---UUGCGCGUGCaGCG-UCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.