miRNA display CGI


Results 21 - 40 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28163 5' -55.4 NC_005887.1 + 35315 0.66 0.642576
Target:  5'- uCUGcaUCGCUccacuGC-CGCGCGcCGCGGCg -3'
miRNA:   3'- -GAC--AGCGAu----UGcGCGUGCaGCGUCGg -5'
28163 5' -55.4 NC_005887.1 + 31533 0.66 0.642576
Target:  5'- uUGUCGCUucgccauuGAcCGCGUuuccguagGCG-CGCAGUCg -3'
miRNA:   3'- gACAGCGA--------UU-GCGCG--------UGCaGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 2683 0.66 0.642576
Target:  5'- cCUGgugCGCgugaaGCGUACGggcggcaaGCGGCCg -3'
miRNA:   3'- -GACa--GCGauug-CGCGUGCag------CGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 2326 0.66 0.635876
Target:  5'- -gGUCGCUGGCaucuauggcgauccgGCGgGCGaccagcgcUCGCAGgCCg -3'
miRNA:   3'- gaCAGCGAUUG---------------CGCgUGC--------AGCGUC-GG- -5'
28163 5' -55.4 NC_005887.1 + 811 0.66 0.635876
Target:  5'- --aUCGCgaucaacagccauGCuCGCGCGaUCGCGGCCg -3'
miRNA:   3'- gacAGCGau-----------UGcGCGUGC-AGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 14495 0.66 0.631409
Target:  5'- --aUCGCgguUGCGCGCGUCGgGuCCg -3'
miRNA:   3'- gacAGCGauuGCGCGUGCAGCgUcGG- -5'
28163 5' -55.4 NC_005887.1 + 28571 0.66 0.631409
Target:  5'- -cGUCGCcgccCGCuGCGCGgaCGCGGUCg -3'
miRNA:   3'- gaCAGCGauu-GCG-CGUGCa-GCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 26922 0.66 0.631409
Target:  5'- -aGUCGCUGGC-CGC-CGUCGaCgaacccugcuGGCCc -3'
miRNA:   3'- gaCAGCGAUUGcGCGuGCAGC-G----------UCGG- -5'
28163 5' -55.4 NC_005887.1 + 36994 0.66 0.620242
Target:  5'- --cUCGCcGGCGaGCACG-CGCAGgCCg -3'
miRNA:   3'- gacAGCGaUUGCgCGUGCaGCGUC-GG- -5'
28163 5' -55.4 NC_005887.1 + 11521 0.66 0.620242
Target:  5'- uUGuUCGCgagcuGCGCGUugcgauccAUGaUCGCGGCCu -3'
miRNA:   3'- gAC-AGCGau---UGCGCG--------UGC-AGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 22614 0.66 0.620242
Target:  5'- --aUCGCU---GCGCGCGUCGCcuacuGGCa -3'
miRNA:   3'- gacAGCGAuugCGCGUGCAGCG-----UCGg -5'
28163 5' -55.4 NC_005887.1 + 10013 0.66 0.620242
Target:  5'- -aGUCGUauuUGAaauCGCGCAgcUUGCGGCCg -3'
miRNA:   3'- gaCAGCG---AUU---GCGCGUgcAGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 33947 0.66 0.620242
Target:  5'- -cGgCGCUcGGCGaGCACGUCGCGuGCg -3'
miRNA:   3'- gaCaGCGA-UUGCgCGUGCAGCGU-CGg -5'
28163 5' -55.4 NC_005887.1 + 7306 0.66 0.620242
Target:  5'- -cGUCGUgu-CGcCGUcCGUCGCcGCCg -3'
miRNA:   3'- gaCAGCGauuGC-GCGuGCAGCGuCGG- -5'
28163 5' -55.4 NC_005887.1 + 4348 0.66 0.620242
Target:  5'- aUGUCGaccuCGCGCGCGaucaUCG-GGCCg -3'
miRNA:   3'- gACAGCgauuGCGCGUGC----AGCgUCGG- -5'
28163 5' -55.4 NC_005887.1 + 11717 0.66 0.609086
Target:  5'- --aUCGCUucgccGCGCGCACGgCGC-GCa -3'
miRNA:   3'- gacAGCGAu----UGCGCGUGCaGCGuCGg -5'
28163 5' -55.4 NC_005887.1 + 2966 0.66 0.609086
Target:  5'- -cGUCGUUcgcggcggccGACGUGUcCGUCGUcGCCu -3'
miRNA:   3'- gaCAGCGA----------UUGCGCGuGCAGCGuCGG- -5'
28163 5' -55.4 NC_005887.1 + 38790 0.66 0.609086
Target:  5'- cCUGaUCGCgagGCGCaGCAC--CGUAGCCu -3'
miRNA:   3'- -GAC-AGCGau-UGCG-CGUGcaGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 1228 0.66 0.607971
Target:  5'- uCUGgcgggCGCUGcgcggcgcucagcACGCGaaaACGUCGCAuaGCUa -3'
miRNA:   3'- -GACa----GCGAU-------------UGCGCg--UGCAGCGU--CGG- -5'
28163 5' -55.4 NC_005887.1 + 11106 0.67 0.59795
Target:  5'- --aUCgGCUggUGCGCGCGaaGCuGGCCg -3'
miRNA:   3'- gacAG-CGAuuGCGCGUGCagCG-UCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.