miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28164 3' -52.9 NC_005887.1 + 4688 0.66 0.753077
Target:  5'- gGCGAGggucuGAUGgGCGCGCCgAUc- -3'
miRNA:   3'- aUGCUUaac--CUACgCGCGCGGgUAac -5'
28164 3' -52.9 NC_005887.1 + 13542 0.66 0.742156
Target:  5'- cGCGAAUgcgaucgGcGAUGCGCuGCcGCCCGa-- -3'
miRNA:   3'- aUGCUUAa------C-CUACGCG-CG-CGGGUaac -5'
28164 3' -52.9 NC_005887.1 + 16192 0.66 0.731113
Target:  5'- gGCGGggUGGuUGCGCGCGgCgCAg-- -3'
miRNA:   3'- aUGCUuaACCuACGCGCGCgG-GUaac -5'
28164 3' -52.9 NC_005887.1 + 6079 0.66 0.719961
Target:  5'- aACGAA---GAUGCGCGCGCUg---- -3'
miRNA:   3'- aUGCUUaacCUACGCGCGCGGguaac -5'
28164 3' -52.9 NC_005887.1 + 12083 0.66 0.719961
Target:  5'- uUGCGAGcgGcGUGCGUGCGCCgGa-- -3'
miRNA:   3'- -AUGCUUaaCcUACGCGCGCGGgUaac -5'
28164 3' -52.9 NC_005887.1 + 4564 0.66 0.719961
Target:  5'- gGCGAGcagacgcGcGAUGCGCGCGCCg---- -3'
miRNA:   3'- aUGCUUaa-----C-CUACGCGCGCGGguaac -5'
28164 3' -52.9 NC_005887.1 + 17036 0.66 0.708712
Target:  5'- aACGGAUcGGAUGCGCaGCGgCaCGcUUGg -3'
miRNA:   3'- aUGCUUAaCCUACGCG-CGCgG-GU-AAC- -5'
28164 3' -52.9 NC_005887.1 + 4361 0.67 0.697381
Target:  5'- cGCGGAUgUGGAUGuCGaguaCGacaGCCCGUUGa -3'
miRNA:   3'- aUGCUUA-ACCUAC-GC----GCg--CGGGUAAC- -5'
28164 3' -52.9 NC_005887.1 + 39243 0.67 0.651486
Target:  5'- gACGuguucgGGAUcucGCGCGCGUCCGUc- -3'
miRNA:   3'- aUGCuuaa--CCUA---CGCGCGCGGGUAac -5'
28164 3' -52.9 NC_005887.1 + 28908 1.06 0.00173
Target:  5'- cUACGAAUUGGAUGCGCGCGCCCAUUGc -3'
miRNA:   3'- -AUGCUUAACCUACGCGCGCGGGUAAC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.