Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28167 | 3' | -52.9 | NC_005887.1 | + | 11607 | 0.69 | 0.540602 |
Target: 5'- -cGCGcUGCGCGCCGa---GCUGCu- -3' miRNA: 3'- caCGCaACGCGUGGCguuuUGACGua -5' |
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28167 | 3' | -52.9 | NC_005887.1 | + | 17630 | 0.69 | 0.529287 |
Target: 5'- cUGCGcacgacgGUcaGCGCCGUGAAGCUGCAg -3' miRNA: 3'- cACGCaa-----CG--CGUGGCGUUUUGACGUa -5' |
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28167 | 3' | -52.9 | NC_005887.1 | + | 32726 | 0.7 | 0.484987 |
Target: 5'- -cGCGcacgcGCGaCACCGguGAGCUGCAc -3' miRNA: 3'- caCGCaa---CGC-GUGGCguUUUGACGUa -5' |
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28167 | 3' | -52.9 | NC_005887.1 | + | 17308 | 0.7 | 0.452954 |
Target: 5'- -cGcCGguucgGCGCACCGCGu-GCUGCAc -3' miRNA: 3'- caC-GCaa---CGCGUGGCGUuuUGACGUa -5' |
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28167 | 3' | -52.9 | NC_005887.1 | + | 40197 | 0.7 | 0.442535 |
Target: 5'- -cGCGcagcGCGCACCGCAc-GCUGUAg -3' miRNA: 3'- caCGCaa--CGCGUGGCGUuuUGACGUa -5' |
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28167 | 3' | -52.9 | NC_005887.1 | + | 18765 | 0.7 | 0.442535 |
Target: 5'- uGUGCGUguccuUGCccuGCGCCGCAuc-CUGCAc -3' miRNA: 3'- -CACGCA-----ACG---CGUGGCGUuuuGACGUa -5' |
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28167 | 3' | -52.9 | NC_005887.1 | + | 40769 | 0.71 | 0.422109 |
Target: 5'- -cGCGccGCGCGCCGCcGAGCcgGCGg -3' miRNA: 3'- caCGCaaCGCGUGGCGuUUUGa-CGUa -5' |
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28167 | 3' | -52.9 | NC_005887.1 | + | 13685 | 0.71 | 0.412111 |
Target: 5'- aGUGCGgccgccGCGCGCCGC---GCUGCc- -3' miRNA: 3'- -CACGCaa----CGCGUGGCGuuuUGACGua -5' |
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28167 | 3' | -52.9 | NC_005887.1 | + | 14928 | 0.72 | 0.373626 |
Target: 5'- -cGCGgUGCGCGCUGUu--GCUGCGg -3' miRNA: 3'- caCGCaACGCGUGGCGuuuUGACGUa -5' |
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28167 | 3' | -52.9 | NC_005887.1 | + | 6086 | 0.72 | 0.364393 |
Target: 5'- aUGC---GCGCGCUGCGAAGCUGUAc -3' miRNA: 3'- cACGcaaCGCGUGGCGUUUUGACGUa -5' |
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28167 | 3' | -52.9 | NC_005887.1 | + | 11786 | 0.72 | 0.337653 |
Target: 5'- cGUGCGcgccgUGCGCGCgGCGAAGCgaucuUGCGa -3' miRNA: 3'- -CACGCa----ACGCGUGgCGUUUUG-----ACGUa -5' |
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28167 | 3' | -52.9 | NC_005887.1 | + | 40078 | 0.73 | 0.304268 |
Target: 5'- -cGCGccaugaUGCGCACCGCGAcgucCUGCAUg -3' miRNA: 3'- caCGCa-----ACGCGUGGCGUUuu--GACGUA- -5' |
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28167 | 3' | -52.9 | NC_005887.1 | + | 40141 | 0.79 | 0.134415 |
Target: 5'- gGUGCGcgcUGCGCGCCGCGcucgccgcguguGAGCUGCGc -3' miRNA: 3'- -CACGCa--ACGCGUGGCGU------------UUUGACGUa -5' |
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28167 | 3' | -52.9 | NC_005887.1 | + | 30494 | 1.06 | 0.001582 |
Target: 5'- cGUGCGUUGCGCACCGCAAAACUGCAUc -3' miRNA: 3'- -CACGCAACGCGUGGCGUUUUGACGUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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