miRNA display CGI


Results 41 - 60 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28168 3' -52.4 NC_005887.1 + 7576 0.68 0.675262
Target:  5'- uGACGC--UCGGgguCGUGCCGCCGa-- -3'
miRNA:   3'- gCUGCGcuAGCUu--GUACGGUGGCaag -5'
28168 3' -52.4 NC_005887.1 + 41272 0.69 0.663961
Target:  5'- uGGCGCcGUCGAccugcGCAcgggcgcgcugcUGCCGCCGggCa -3'
miRNA:   3'- gCUGCGcUAGCU-----UGU------------ACGGUGGCaaG- -5'
28168 3' -52.4 NC_005887.1 + 40575 0.69 0.663961
Target:  5'- uCGGCGCGcUCGAGCAaguacaacCCGCgGUUCc -3'
miRNA:   3'- -GCUGCGCuAGCUUGUac------GGUGgCAAG- -5'
28168 3' -52.4 NC_005887.1 + 974 0.69 0.642412
Target:  5'- aCGAgGUGAUCGccgacacgcgcaauuGCcgGCCGCCGUg- -3'
miRNA:   3'- -GCUgCGCUAGCu--------------UGuaCGGUGGCAag -5'
28168 3' -52.4 NC_005887.1 + 9309 0.69 0.641277
Target:  5'- aGACGCGAUCGccGACGcGgCGCaGUUCg -3'
miRNA:   3'- gCUGCGCUAGC--UUGUaCgGUGgCAAG- -5'
28168 3' -52.4 NC_005887.1 + 33067 0.69 0.641277
Target:  5'- aCGGCaGCGuGUCGcGCAUGaCCACCGa-- -3'
miRNA:   3'- -GCUG-CGC-UAGCuUGUAC-GGUGGCaag -5'
28168 3' -52.4 NC_005887.1 + 14238 0.69 0.641277
Target:  5'- nCGGCGCGGcaucCGAucuUGCCGCCGgUCu -3'
miRNA:   3'- -GCUGCGCUa---GCUuguACGGUGGCaAG- -5'
28168 3' -52.4 NC_005887.1 + 22289 0.69 0.629916
Target:  5'- -cACGCGA-CGAucaGCggGCCACCGUa- -3'
miRNA:   3'- gcUGCGCUaGCU---UGuaCGGUGGCAag -5'
28168 3' -52.4 NC_005887.1 + 8931 0.69 0.629916
Target:  5'- gCGuCGCGAUcucgaCGGGCGcGCCGgCGUUCa -3'
miRNA:   3'- -GCuGCGCUA-----GCUUGUaCGGUgGCAAG- -5'
28168 3' -52.4 NC_005887.1 + 18743 0.7 0.584596
Target:  5'- aGAuCGCGcaGUCGAACAcGCCACuCGUg- -3'
miRNA:   3'- gCU-GCGC--UAGCUUGUaCGGUG-GCAag -5'
28168 3' -52.4 NC_005887.1 + 16572 0.7 0.573348
Target:  5'- gCGACGCGAUCGGccugcgACAUcGCCgACCa--- -3'
miRNA:   3'- -GCUGCGCUAGCU------UGUA-CGG-UGGcaag -5'
28168 3' -52.4 NC_005887.1 + 40030 0.7 0.573348
Target:  5'- uGGCGCGGcUCGAggcgGCcgGCCuacgcccgauACCGUUCc -3'
miRNA:   3'- gCUGCGCU-AGCU----UGuaCGG----------UGGCAAG- -5'
28168 3' -52.4 NC_005887.1 + 15480 0.7 0.573348
Target:  5'- aGACGCGuUCGAGCugGCCGCgCGUc- -3'
miRNA:   3'- gCUGCGCuAGCUUGuaCGGUG-GCAag -5'
28168 3' -52.4 NC_005887.1 + 6449 0.7 0.562151
Target:  5'- gCGuACGCu-UCGAGCAUGCCGCaGUUg -3'
miRNA:   3'- -GC-UGCGcuAGCUUGUACGGUGgCAAg -5'
28168 3' -52.4 NC_005887.1 + 38997 0.7 0.562151
Target:  5'- uGGCG-GAUUGuuuCGUGCCACCGcgCa -3'
miRNA:   3'- gCUGCgCUAGCuu-GUACGGUGGCaaG- -5'
28168 3' -52.4 NC_005887.1 + 1839 0.7 0.551014
Target:  5'- cCGACGCGcagGUCGAGCAUGUCgaggAUCGgcUUCg -3'
miRNA:   3'- -GCUGCGC---UAGCUUGUACGG----UGGC--AAG- -5'
28168 3' -52.4 NC_005887.1 + 18636 0.71 0.528952
Target:  5'- aCGcCGCGA-CGAGCAUGUCGCCc--- -3'
miRNA:   3'- -GCuGCGCUaGCUUGUACGGUGGcaag -5'
28168 3' -52.4 NC_005887.1 + 41016 0.71 0.518043
Target:  5'- cCGAaGCGGUCGAGCAUGCgcuCGgCGUUg -3'
miRNA:   3'- -GCUgCGCUAGCUUGUACG---GUgGCAAg -5'
28168 3' -52.4 NC_005887.1 + 33285 0.72 0.485886
Target:  5'- aCGGCGCGAcCGAGugccaGUGCgGCgCGUUCa -3'
miRNA:   3'- -GCUGCGCUaGCUUg----UACGgUG-GCAAG- -5'
28168 3' -52.4 NC_005887.1 + 32640 0.72 0.475377
Target:  5'- aCGAUGUGAUCGAcCGUGUgcagcuCACCGgugUCg -3'
miRNA:   3'- -GCUGCGCUAGCUuGUACG------GUGGCa--AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.