miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2817 3' -50.2 NC_001491.2 + 125478 0.66 0.997251
Target:  5'- aCCCGCGGGCGcccgccgcccgccgGGCGggag-ACGUGAc -3'
miRNA:   3'- -GGGCGCCUGC--------------UCGCgauaaUGUAUUc -5'
2817 3' -50.2 NC_001491.2 + 123374 0.66 0.996909
Target:  5'- aCCGCGcacACGcGCGCUcgUACAUc-- -3'
miRNA:   3'- gGGCGCc--UGCuCGCGAuaAUGUAuuc -5'
2817 3' -50.2 NC_001491.2 + 72856 0.66 0.996909
Target:  5'- cUuuGUGGGCGGGCGCgccugGCucggguucgucaGUGAGg -3'
miRNA:   3'- -GggCGCCUGCUCGCGauaa-UG------------UAUUC- -5'
2817 3' -50.2 NC_001491.2 + 121563 0.66 0.995526
Target:  5'- cCUCGCGGGCacgcgcacggcgucGAuGCGCUGgcuggaGCGUGGGg -3'
miRNA:   3'- -GGGCGCCUG--------------CU-CGCGAUaa----UGUAUUC- -5'
2817 3' -50.2 NC_001491.2 + 33138 0.66 0.995313
Target:  5'- gUCCGUGGACGucccuguuucuuacGUGCUGuUUACGUAc- -3'
miRNA:   3'- -GGGCGCCUGCu-------------CGCGAU-AAUGUAUuc -5'
2817 3' -50.2 NC_001491.2 + 139787 0.66 0.995017
Target:  5'- gCCgGCGGACGcagAGCGCUAc-------- -3'
miRNA:   3'- -GGgCGCCUGC---UCGCGAUaauguauuc -5'
2817 3' -50.2 NC_001491.2 + 114567 0.67 0.994209
Target:  5'- gCCUGCGGccgGCGcGGCGCUGggGCcgugGAGc -3'
miRNA:   3'- -GGGCGCC---UGC-UCGCGAUaaUGua--UUC- -5'
2817 3' -50.2 NC_001491.2 + 39532 0.67 0.994209
Target:  5'- gUCGCGGGCG-GCGCUAauuucgGCGg--- -3'
miRNA:   3'- gGGCGCCUGCuCGCGAUaa----UGUauuc -5'
2817 3' -50.2 NC_001491.2 + 129826 0.67 0.992277
Target:  5'- gCCGCGGugGugguAGCcGCggugGUUGCAgAGGa -3'
miRNA:   3'- gGGCGCCugC----UCG-CGa---UAAUGUaUUC- -5'
2817 3' -50.2 NC_001491.2 + 96531 0.69 0.976596
Target:  5'- cCCCGCgGGACGGGUcccagGCUAgaucgcggGCAUGGc -3'
miRNA:   3'- -GGGCG-CCUGCUCG-----CGAUaa------UGUAUUc -5'
2817 3' -50.2 NC_001491.2 + 79339 0.7 0.949381
Target:  5'- cUCCGCGGuccaGCGGggucGCGCUG--GCAUGAGc -3'
miRNA:   3'- -GGGCGCC----UGCU----CGCGAUaaUGUAUUC- -5'
2817 3' -50.2 NC_001491.2 + 148246 0.71 0.944915
Target:  5'- aCCCGCGGAgucaGGGCGCcc--GCAUGu- -3'
miRNA:   3'- -GGGCGCCUg---CUCGCGauaaUGUAUuc -5'
2817 3' -50.2 NC_001491.2 + 144475 0.71 0.924528
Target:  5'- uUCCGCGG-CGGGCGCUcggACGacGGg -3'
miRNA:   3'- -GGGCGCCuGCUCGCGAuaaUGUauUC- -5'
2817 3' -50.2 NC_001491.2 + 124752 1.13 0.006333
Target:  5'- aCCCGCGGACGAGCGCUAUUACAUAAGg -3'
miRNA:   3'- -GGGCGCCUGCUCGCGAUAAUGUAUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.