Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2817 | 3' | -50.2 | NC_001491.2 | + | 124752 | 1.13 | 0.006333 |
Target: 5'- aCCCGCGGACGAGCGCUAUUACAUAAGg -3' miRNA: 3'- -GGGCGCCUGCUCGCGAUAAUGUAUUC- -5' |
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2817 | 3' | -50.2 | NC_001491.2 | + | 144475 | 0.71 | 0.924528 |
Target: 5'- uUCCGCGG-CGGGCGCUcggACGacGGg -3' miRNA: 3'- -GGGCGCCuGCUCGCGAuaaUGUauUC- -5' |
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2817 | 3' | -50.2 | NC_001491.2 | + | 148246 | 0.71 | 0.944915 |
Target: 5'- aCCCGCGGAgucaGGGCGCcc--GCAUGu- -3' miRNA: 3'- -GGGCGCCUg---CUCGCGauaaUGUAUuc -5' |
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2817 | 3' | -50.2 | NC_001491.2 | + | 79339 | 0.7 | 0.949381 |
Target: 5'- cUCCGCGGuccaGCGGggucGCGCUG--GCAUGAGc -3' miRNA: 3'- -GGGCGCC----UGCU----CGCGAUaaUGUAUUC- -5' |
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2817 | 3' | -50.2 | NC_001491.2 | + | 96531 | 0.69 | 0.976596 |
Target: 5'- cCCCGCgGGACGGGUcccagGCUAgaucgcggGCAUGGc -3' miRNA: 3'- -GGGCG-CCUGCUCG-----CGAUaa------UGUAUUc -5' |
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2817 | 3' | -50.2 | NC_001491.2 | + | 129826 | 0.67 | 0.992277 |
Target: 5'- gCCGCGGugGugguAGCcGCggugGUUGCAgAGGa -3' miRNA: 3'- gGGCGCCugC----UCG-CGa---UAAUGUaUUC- -5' |
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2817 | 3' | -50.2 | NC_001491.2 | + | 114567 | 0.67 | 0.994209 |
Target: 5'- gCCUGCGGccgGCGcGGCGCUGggGCcgugGAGc -3' miRNA: 3'- -GGGCGCC---UGC-UCGCGAUaaUGua--UUC- -5' |
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2817 | 3' | -50.2 | NC_001491.2 | + | 39532 | 0.67 | 0.994209 |
Target: 5'- gUCGCGGGCG-GCGCUAauuucgGCGg--- -3' miRNA: 3'- gGGCGCCUGCuCGCGAUaa----UGUauuc -5' |
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2817 | 3' | -50.2 | NC_001491.2 | + | 139787 | 0.66 | 0.995017 |
Target: 5'- gCCgGCGGACGcagAGCGCUAc-------- -3' miRNA: 3'- -GGgCGCCUGC---UCGCGAUaauguauuc -5' |
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2817 | 3' | -50.2 | NC_001491.2 | + | 33138 | 0.66 | 0.995313 |
Target: 5'- gUCCGUGGACGucccuguuucuuacGUGCUGuUUACGUAc- -3' miRNA: 3'- -GGGCGCCUGCu-------------CGCGAU-AAUGUAUuc -5' |
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2817 | 3' | -50.2 | NC_001491.2 | + | 121563 | 0.66 | 0.995526 |
Target: 5'- cCUCGCGGGCacgcgcacggcgucGAuGCGCUGgcuggaGCGUGGGg -3' miRNA: 3'- -GGGCGCCUG--------------CU-CGCGAUaa----UGUAUUC- -5' |
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2817 | 3' | -50.2 | NC_001491.2 | + | 72856 | 0.66 | 0.996909 |
Target: 5'- cUuuGUGGGCGGGCGCgccugGCucggguucgucaGUGAGg -3' miRNA: 3'- -GggCGCCUGCUCGCGauaa-UG------------UAUUC- -5' |
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2817 | 3' | -50.2 | NC_001491.2 | + | 123374 | 0.66 | 0.996909 |
Target: 5'- aCCGCGcacACGcGCGCUcgUACAUc-- -3' miRNA: 3'- gGGCGCc--UGCuCGCGAuaAUGUAuuc -5' |
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2817 | 3' | -50.2 | NC_001491.2 | + | 125478 | 0.66 | 0.997251 |
Target: 5'- aCCCGCGGGCGcccgccgcccgccgGGCGggag-ACGUGAc -3' miRNA: 3'- -GGGCGCCUGC--------------UCGCgauaaUGUAUUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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