miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28170 3' -58.5 NC_005887.1 + 32300 0.66 0.460861
Target:  5'- --cGUCGGGc-CAGCcGGCgCGCCGCa -3'
miRNA:   3'- acaCGGCCCaaGUUGaCCG-GCGGUGa -5'
28170 3' -58.5 NC_005887.1 + 16319 0.66 0.450893
Target:  5'- --cGCCGGccuGUUCGA--GGUCGCCGCg -3'
miRNA:   3'- acaCGGCC---CAAGUUgaCCGGCGGUGa -5'
28170 3' -58.5 NC_005887.1 + 31405 0.66 0.450893
Target:  5'- cGUGCCGuGGUUCAGCggGGUaggGCUg-- -3'
miRNA:   3'- aCACGGC-CCAAGUUGa-CCGg--CGGuga -5'
28170 3' -58.5 NC_005887.1 + 41998 0.66 0.421719
Target:  5'- --cGCCGGGcagcUCAGCUGcgaGCCGCUcaGCa -3'
miRNA:   3'- acaCGGCCCa---AGUUGAC---CGGCGG--UGa -5'
28170 3' -58.5 NC_005887.1 + 13700 0.67 0.402914
Target:  5'- gGUGCUGc--UCGGCUgagugcGGCCGCCGCg -3'
miRNA:   3'- aCACGGCccaAGUUGA------CCGGCGGUGa -5'
28170 3' -58.5 NC_005887.1 + 2017 0.67 0.402914
Target:  5'- --cGCCGGGUUCAcgACccaccgaucGCCGUCACg -3'
miRNA:   3'- acaCGGCCCAAGU--UGac-------CGGCGGUGa -5'
28170 3' -58.5 NC_005887.1 + 9552 0.67 0.401987
Target:  5'- -aUGCCGGGgUCGGCcgGGUcguucguCGCCACc -3'
miRNA:   3'- acACGGCCCaAGUUGa-CCG-------GCGGUGa -5'
28170 3' -58.5 NC_005887.1 + 41665 0.67 0.393712
Target:  5'- --cGCCGGccgccgCAcCUgGGCCGCCGCUg -3'
miRNA:   3'- acaCGGCCcaa---GUuGA-CCGGCGGUGA- -5'
28170 3' -58.5 NC_005887.1 + 29413 0.67 0.384648
Target:  5'- -cUGCCGGGUUCuccGCguaCCGCUACa -3'
miRNA:   3'- acACGGCCCAAGu--UGaccGGCGGUGa -5'
28170 3' -58.5 NC_005887.1 + 1664 0.67 0.384648
Target:  5'- aGUGCguugGcGGUUCGA--GGCCGCCACc -3'
miRNA:   3'- aCACGg---C-CCAAGUUgaCCGGCGGUGa -5'
28170 3' -58.5 NC_005887.1 + 14363 0.67 0.375723
Target:  5'- cGUGCCGGG--CAcCUGuucgaGUCGCCGCUc -3'
miRNA:   3'- aCACGGCCCaaGUuGAC-----CGGCGGUGA- -5'
28170 3' -58.5 NC_005887.1 + 8132 0.67 0.366939
Target:  5'- cUGU-UCGGGUUCAGCUaucaauaccGGCUGCCGa- -3'
miRNA:   3'- -ACAcGGCCCAAGUUGA---------CCGGCGGUga -5'
28170 3' -58.5 NC_005887.1 + 13140 0.68 0.340619
Target:  5'- cGUGCCGGGccUCGucucgucGCUuGCCGCgCGCg -3'
miRNA:   3'- aCACGGCCCa-AGU-------UGAcCGGCG-GUGa -5'
28170 3' -58.5 NC_005887.1 + 32285 0.68 0.336504
Target:  5'- gGUGgCGGGUUUGAugacgagcggcaccuCUGGCCG-CACUg -3'
miRNA:   3'- aCACgGCCCAAGUU---------------GACCGGCgGUGA- -5'
28170 3' -58.5 NC_005887.1 + 26402 0.69 0.294383
Target:  5'- -cUG-CGGGUUCuggucgAGCUGGCgGCCGCg -3'
miRNA:   3'- acACgGCCCAAG------UUGACCGgCGGUGa -5'
28170 3' -58.5 NC_005887.1 + 22114 0.7 0.246051
Target:  5'- cUGcUGCCGGGUgCGAUUGGCuCGCUg-- -3'
miRNA:   3'- -AC-ACGGCCCAaGUUGACCG-GCGGuga -5'
28170 3' -58.5 NC_005887.1 + 17269 0.72 0.193782
Target:  5'- cGUGCCGGGcgaGACgucgGGCggCGCCGCg -3'
miRNA:   3'- aCACGGCCCaagUUGa---CCG--GCGGUGa -5'
28170 3' -58.5 NC_005887.1 + 35416 0.76 0.096229
Target:  5'- gGUGCCGGGcgugaAGCUcguggccGGCCGCCGCg -3'
miRNA:   3'- aCACGGCCCaag--UUGA-------CCGGCGGUGa -5'
28170 3' -58.5 NC_005887.1 + 31611 1.07 0.000423
Target:  5'- aUGUGCCGGGUUCAACUGGCCGCCACUu -3'
miRNA:   3'- -ACACGGCCCAAGUUGACCGGCGGUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.