miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28172 5' -58.8 NC_005887.1 + 32781 0.66 0.453741
Target:  5'- cGGCUCGUgCgCAGGaucgGcGCGCGCCGCu -3'
miRNA:   3'- cUCGGGCA-G-GUCUa---CuUGCGCGGCGu -5'
28172 5' -58.8 NC_005887.1 + 27673 0.66 0.45374
Target:  5'- cGAGCCCGaUCguGcgGGGCaGCGUCGa- -3'
miRNA:   3'- -CUCGGGC-AGguCuaCUUG-CGCGGCgu -5'
28172 5' -58.8 NC_005887.1 + 19532 0.66 0.45374
Target:  5'- uGAGCaCGUUCGGA----UGCGCCGCGu -3'
miRNA:   3'- -CUCGgGCAGGUCUacuuGCGCGGCGU- -5'
28172 5' -58.8 NC_005887.1 + 9555 0.66 0.45374
Target:  5'- -uGCCCGUgaAGcgGcGCGCGCCGa- -3'
miRNA:   3'- cuCGGGCAggUCuaCuUGCGCGGCgu -5'
28172 5' -58.8 NC_005887.1 + 25874 0.66 0.4313
Target:  5'- cAGCCCG-CCGGAUccugccgcgcggucGAGCGCaugcCCGCGc -3'
miRNA:   3'- cUCGGGCaGGUCUA--------------CUUGCGc---GGCGU- -5'
28172 5' -58.8 NC_005887.1 + 8582 0.66 0.4246
Target:  5'- aAGCCCGgcacgccgcgCCAGAUGcucgugaaggccGGCGCGCUGa- -3'
miRNA:   3'- cUCGGGCa---------GGUCUAC------------UUGCGCGGCgu -5'
28172 5' -58.8 NC_005887.1 + 31589 0.66 0.415138
Target:  5'- gGAGCCCcaugagCCAGcggGAAUGUGCCGgGu -3'
miRNA:   3'- -CUCGGGca----GGUCua-CUUGCGCGGCgU- -5'
28172 5' -58.8 NC_005887.1 + 38947 0.67 0.378617
Target:  5'- -cGCCCuG-CCAGcgGuAGCGCGCgGCGa -3'
miRNA:   3'- cuCGGG-CaGGUCuaC-UUGCGCGgCGU- -5'
28172 5' -58.8 NC_005887.1 + 11713 0.67 0.378617
Target:  5'- cGAGCgUCGcaucaacgaUCCGGAUcugccGGACGCGCUGCGc -3'
miRNA:   3'- -CUCG-GGC---------AGGUCUA-----CUUGCGCGGCGU- -5'
28172 5' -58.8 NC_005887.1 + 368 0.67 0.36983
Target:  5'- cAGgCCGUgCugcuGAUaggcGAGCGCGCCGCGc -3'
miRNA:   3'- cUCgGGCAgGu---CUA----CUUGCGCGGCGU- -5'
28172 5' -58.8 NC_005887.1 + 31359 0.67 0.361184
Target:  5'- uGGCCCacGUCCAGAucaUGAucucgACGCGCUcgGCGu -3'
miRNA:   3'- cUCGGG--CAGGUCU---ACU-----UGCGCGG--CGU- -5'
28172 5' -58.8 NC_005887.1 + 41200 0.67 0.361184
Target:  5'- cGGCCCGU-CAGAUccuucACGCGCaCGCGc -3'
miRNA:   3'- cUCGGGCAgGUCUAcu---UGCGCG-GCGU- -5'
28172 5' -58.8 NC_005887.1 + 40742 0.68 0.344317
Target:  5'- -cGCCCGcgUCgAGgcGAucgccguugGCGCGCCGCGc -3'
miRNA:   3'- cuCGGGC--AGgUCuaCU---------UGCGCGGCGU- -5'
28172 5' -58.8 NC_005887.1 + 9170 0.68 0.344317
Target:  5'- cGGGCUCGUCCGGccgcuacGAAUGCacgaagcaccGCCGCGg -3'
miRNA:   3'- -CUCGGGCAGGUCua-----CUUGCG----------CGGCGU- -5'
28172 5' -58.8 NC_005887.1 + 14095 0.69 0.275542
Target:  5'- -uGCUCGUCaguGGUGAA-GCGCCGCu -3'
miRNA:   3'- cuCGGGCAGgu-CUACUUgCGCGGCGu -5'
28172 5' -58.8 NC_005887.1 + 8870 0.7 0.248687
Target:  5'- -cGCCCGUCgAGAUc-GCGaCGCCGUAc -3'
miRNA:   3'- cuCGGGCAGgUCUAcuUGC-GCGGCGU- -5'
28172 5' -58.8 NC_005887.1 + 25482 0.7 0.236089
Target:  5'- -uGCCUGUCgAGccGucCGCGCCGCGg -3'
miRNA:   3'- cuCGGGCAGgUCuaCuuGCGCGGCGU- -5'
28172 5' -58.8 NC_005887.1 + 28901 0.76 0.087528
Target:  5'- -cGCCCGUCaGGAUGAACGUGCUgaGCGg -3'
miRNA:   3'- cuCGGGCAGgUCUACUUGCGCGG--CGU- -5'
28172 5' -58.8 NC_005887.1 + 33197 1.08 0.000359
Target:  5'- cGAGCCCGUCCAGAUGAACGCGCCGCAc -3'
miRNA:   3'- -CUCGGGCAGGUCUACUUGCGCGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.