miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28175 5' -58.9 NC_005887.1 + 12425 0.66 0.45657
Target:  5'- cCGaGAUCGUGCGcGagGcCCGCGGCAUg -3'
miRNA:   3'- -GCcUUGGCACGC-CagCuGGCGUCGUA- -5'
28175 5' -58.9 NC_005887.1 + 25256 0.66 0.445773
Target:  5'- cCGGcgUCGUcgagguauugcgaGCGGUCGAgCaGCGGCAUg -3'
miRNA:   3'- -GCCuuGGCA-------------CGCCAGCUgG-CGUCGUA- -5'
28175 5' -58.9 NC_005887.1 + 16444 0.66 0.443825
Target:  5'- uCGaGAACCGcgugcgcgcgggcaUGCGcUCGACCGCgcGGCAg -3'
miRNA:   3'- -GC-CUUGGC--------------ACGCcAGCUGGCG--UCGUa -5'
28175 5' -58.9 NC_005887.1 + 38999 0.66 0.427465
Target:  5'- gCGGAuuguuucgugccACCGcGCaGUCGACgGCGGCu- -3'
miRNA:   3'- -GCCU------------UGGCaCGcCAGCUGgCGUCGua -5'
28175 5' -58.9 NC_005887.1 + 34936 0.66 0.427465
Target:  5'- -cGAGgCGgcgGCGGgugCGACCGUGGCGa -3'
miRNA:   3'- gcCUUgGCa--CGCCa--GCUGGCGUCGUa -5'
28175 5' -58.9 NC_005887.1 + 26205 0.67 0.372709
Target:  5'- aCGGGGCgGcgGUGGcCGGCCuGCAGCu- -3'
miRNA:   3'- -GCCUUGgCa-CGCCaGCUGG-CGUCGua -5'
28175 5' -58.9 NC_005887.1 + 34289 0.69 0.292581
Target:  5'- cCGucGCCGUGCGGcUGACUGCGGgCGg -3'
miRNA:   3'- -GCcuUGGCACGCCaGCUGGCGUC-GUa -5'
28175 5' -58.9 NC_005887.1 + 5816 0.69 0.274081
Target:  5'- cCGGAauucgcgaaauaccuGCCGccgcccgaugcUGCGGUCGACCGCA-CGg -3'
miRNA:   3'- -GCCU---------------UGGC-----------ACGCCAGCUGGCGUcGUa -5'
28175 5' -58.9 NC_005887.1 + 40784 0.69 0.27132
Target:  5'- -cGAGCCG-GCGGUCGAgguUCGUGGCGg -3'
miRNA:   3'- gcCUUGGCaCGCCAGCU---GGCGUCGUa -5'
28175 5' -58.9 NC_005887.1 + 5405 0.71 0.22656
Target:  5'- gGuGAACCG-GCGGgCGgcGCCGCAGCGa -3'
miRNA:   3'- gC-CUUGGCaCGCCaGC--UGGCGUCGUa -5'
28175 5' -58.9 NC_005887.1 + 25881 0.72 0.193322
Target:  5'- cCGGAuccuGCCGcGCGGUCGAgCGCAuGCc- -3'
miRNA:   3'- -GCCU----UGGCaCGCCAGCUgGCGU-CGua -5'
28175 5' -58.9 NC_005887.1 + 36502 1.05 0.000605
Target:  5'- cCGGAACCGUGCGGUCGACCGCAGCAUc -3'
miRNA:   3'- -GCCUUGGCACGCCAGCUGGCGUCGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.