Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28176 | 3' | -54.5 | NC_005887.1 | + | 1491 | 0.67 | 0.610683 |
Target: 5'- gUGCGGCGCUCgcgCGGCGcGGC-CGUg -3' miRNA: 3'- gAUGCUGCGAGa--GUCGUcUCGcGUAg -5' |
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28176 | 3' | -54.5 | NC_005887.1 | + | 1909 | 0.68 | 0.499466 |
Target: 5'- gCUACG-CGUUCuuUCGGCAGccgGGCgGCGUCa -3' miRNA: 3'- -GAUGCuGCGAG--AGUCGUC---UCG-CGUAG- -5' |
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28176 | 3' | -54.5 | NC_005887.1 | + | 2487 | 0.66 | 0.622067 |
Target: 5'- -cGCGAgGCgCUCAGCGguGAGCG-GUCg -3' miRNA: 3'- gaUGCUgCGaGAGUCGU--CUCGCgUAG- -5' |
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28176 | 3' | -54.5 | NC_005887.1 | + | 2562 | 0.71 | 0.379503 |
Target: 5'- -gACGACGCgcgcaacgaUCGGCGcGAGCGCcgCg -3' miRNA: 3'- gaUGCUGCGag-------AGUCGU-CUCGCGuaG- -5' |
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28176 | 3' | -54.5 | NC_005887.1 | + | 4361 | 0.67 | 0.587984 |
Target: 5'- -gACGAUGCgCUCuGCuGAGaGCGUCg -3' miRNA: 3'- gaUGCUGCGaGAGuCGuCUCgCGUAG- -5' |
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28176 | 3' | -54.5 | NC_005887.1 | + | 7031 | 0.66 | 0.667589 |
Target: 5'- -cGCGGCGCgcggCAGUGGAGCGaugCa -3' miRNA: 3'- gaUGCUGCGaga-GUCGUCUCGCguaG- -5' |
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28176 | 3' | -54.5 | NC_005887.1 | + | 7215 | 0.77 | 0.140759 |
Target: 5'- gUGCGcagGCGCUgUCGGCGucGGGCGCAUCg -3' miRNA: 3'- gAUGC---UGCGAgAGUCGU--CUCGCGUAG- -5' |
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28176 | 3' | -54.5 | NC_005887.1 | + | 8405 | 0.68 | 0.554256 |
Target: 5'- -cGCGACGUgCUC-GCcGAGCGcCGUCg -3' miRNA: 3'- gaUGCUGCGaGAGuCGuCUCGC-GUAG- -5' |
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28176 | 3' | -54.5 | NC_005887.1 | + | 11307 | 0.69 | 0.488788 |
Target: 5'- -aGCGGCcgGCUCggCAGC-GAGCGCcgCa -3' miRNA: 3'- gaUGCUG--CGAGa-GUCGuCUCGCGuaG- -5' |
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28176 | 3' | -54.5 | NC_005887.1 | + | 11605 | 0.66 | 0.667589 |
Target: 5'- --uCGGCGCUCgacacgCAgguGCAGAGCGUg-- -3' miRNA: 3'- gauGCUGCGAGa-----GU---CGUCUCGCGuag -5' |
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28176 | 3' | -54.5 | NC_005887.1 | + | 12642 | 0.66 | 0.644853 |
Target: 5'- cCUGCGACGCga-CGGCgAGuggcuGCGCGUg -3' miRNA: 3'- -GAUGCUGCGagaGUCG-UCu----CGCGUAg -5' |
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28176 | 3' | -54.5 | NC_005887.1 | + | 13086 | 0.71 | 0.388749 |
Target: 5'- -cGCGGCGCUCgaucGCGGAGUGCu-- -3' miRNA: 3'- gaUGCUGCGAGagu-CGUCUCGCGuag -5' |
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28176 | 3' | -54.5 | NC_005887.1 | + | 13438 | 0.69 | 0.446199 |
Target: 5'- -aGCGGCGCaccgCUCAGCAcguucauccugacGGGCGCGc- -3' miRNA: 3'- gaUGCUGCGa---GAGUCGU-------------CUCGCGUag -5' |
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28176 | 3' | -54.5 | NC_005887.1 | + | 13798 | 0.67 | 0.599318 |
Target: 5'- -gGCGACGCcuacaaaUUCAGCAGcccGGCGCGc- -3' miRNA: 3'- gaUGCUGCGa------GAGUCGUC---UCGCGUag -5' |
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28176 | 3' | -54.5 | NC_005887.1 | + | 14090 | 0.67 | 0.565444 |
Target: 5'- -gAUGAUGCUCgUCAGUGGugaAGCGCcgCu -3' miRNA: 3'- gaUGCUGCGAG-AGUCGUC---UCGCGuaG- -5' |
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28176 | 3' | -54.5 | NC_005887.1 | + | 14633 | 0.67 | 0.576689 |
Target: 5'- -gGCG-CGCUCaCGGCAGccGGCGCGg- -3' miRNA: 3'- gaUGCuGCGAGaGUCGUC--UCGCGUag -5' |
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28176 | 3' | -54.5 | NC_005887.1 | + | 18312 | 0.7 | 0.427175 |
Target: 5'- -gGCGAUGaUCUCgcGGCacugGGGGCGCAUCg -3' miRNA: 3'- gaUGCUGCgAGAG--UCG----UCUCGCGUAG- -5' |
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28176 | 3' | -54.5 | NC_005887.1 | + | 18414 | 0.67 | 0.587984 |
Target: 5'- -cGCGGCGCUCgucgUCAGCAcGAcgcugaucgGCGCgAUCu -3' miRNA: 3'- gaUGCUGCGAG----AGUCGU-CU---------CGCG-UAG- -5' |
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28176 | 3' | -54.5 | NC_005887.1 | + | 19380 | 0.69 | 0.457426 |
Target: 5'- -cGCGccAUGCUCgcgCAgcugccGCAGAGCGUAUCg -3' miRNA: 3'- gaUGC--UGCGAGa--GU------CGUCUCGCGUAG- -5' |
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28176 | 3' | -54.5 | NC_005887.1 | + | 21444 | 0.76 | 0.166974 |
Target: 5'- -gACGACGCUCUCAGCGucGAGCaCgGUCa -3' miRNA: 3'- gaUGCUGCGAGAGUCGU--CUCGcG-UAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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