Results 21 - 38 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28176 | 3' | -54.5 | NC_005887.1 | + | 22952 | 0.67 | 0.609545 |
Target: 5'- -cGCGgaccgauACGCUCUgCGGCAGcugcgcgagcauGGCGCGUUg -3' miRNA: 3'- gaUGC-------UGCGAGA-GUCGUC------------UCGCGUAG- -5' |
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28176 | 3' | -54.5 | NC_005887.1 | + | 25990 | 0.66 | 0.678909 |
Target: 5'- -gGCGACGCgguaCAGCuucacGGGCgGCGUCg -3' miRNA: 3'- gaUGCUGCGaga-GUCGu----CUCG-CGUAG- -5' |
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28176 | 3' | -54.5 | NC_005887.1 | + | 26280 | 0.72 | 0.327192 |
Target: 5'- gUGCGGCGCaacacCAGCAGgaAGCGUAUCg -3' miRNA: 3'- gAUGCUGCGaga--GUCGUC--UCGCGUAG- -5' |
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28176 | 3' | -54.5 | NC_005887.1 | + | 26407 | 0.67 | 0.565444 |
Target: 5'- gUGCGGCGCg--UGGCc-GGCGCAUCg -3' miRNA: 3'- gAUGCUGCGagaGUCGucUCGCGUAG- -5' |
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28176 | 3' | -54.5 | NC_005887.1 | + | 27342 | 0.67 | 0.599318 |
Target: 5'- aCUGCGccACGCg--CAGCGGcGCGCAg- -3' miRNA: 3'- -GAUGC--UGCGagaGUCGUCuCGCGUag -5' |
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28176 | 3' | -54.5 | NC_005887.1 | + | 27404 | 0.7 | 0.398142 |
Target: 5'- uUGCGGCGCgUCguaCGGCAGcGCGCGg- -3' miRNA: 3'- gAUGCUGCG-AGa--GUCGUCuCGCGUag -5' |
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28176 | 3' | -54.5 | NC_005887.1 | + | 28053 | 0.69 | 0.467763 |
Target: 5'- cCUGCGcuuGCGggUUCAGCGuGAGCGUGUCc -3' miRNA: 3'- -GAUGC---UGCgaGAGUCGU-CUCGCGUAG- -5' |
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28176 | 3' | -54.5 | NC_005887.1 | + | 28792 | 0.67 | 0.587984 |
Target: 5'- --uCGGCcuGCUCg-GGCGGcAGCGCAUCg -3' miRNA: 3'- gauGCUG--CGAGagUCGUC-UCGCGUAG- -5' |
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28176 | 3' | -54.5 | NC_005887.1 | + | 29505 | 0.66 | 0.644853 |
Target: 5'- -gGCGGC-CUCgaCGGCGG-GCGCGUUg -3' miRNA: 3'- gaUGCUGcGAGa-GUCGUCuCGCGUAG- -5' |
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28176 | 3' | -54.5 | NC_005887.1 | + | 34241 | 0.75 | 0.192081 |
Target: 5'- -aGCGGCGC-CUCGGC-GAGCGCGg- -3' miRNA: 3'- gaUGCUGCGaGAGUCGuCUCGCGUag -5' |
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28176 | 3' | -54.5 | NC_005887.1 | + | 35658 | 0.66 | 0.677779 |
Target: 5'- gCU-CGACGCUgUCgacauacAGCAGcGCGCgAUCg -3' miRNA: 3'- -GAuGCUGCGAgAG-------UCGUCuCGCG-UAG- -5' |
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28176 | 3' | -54.5 | NC_005887.1 | + | 37984 | 1.1 | 0.000593 |
Target: 5'- gCUACGACGCUCUCAGCAGAGCGCAUCg -3' miRNA: 3'- -GAUGCUGCGAGAGUCGUCUCGCGUAG- -5' |
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28176 | 3' | -54.5 | NC_005887.1 | + | 39343 | 0.69 | 0.488788 |
Target: 5'- -cGCGGCGCUggCcGCAG-GCGCGUUg -3' miRNA: 3'- gaUGCUGCGAgaGuCGUCuCGCGUAG- -5' |
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28176 | 3' | -54.5 | NC_005887.1 | + | 39423 | 0.68 | 0.532087 |
Target: 5'- -cGCGGCGCUUgcgCAGCuuGGcGGCgGCGUCg -3' miRNA: 3'- gaUGCUGCGAGa--GUCG--UC-UCG-CGUAG- -5' |
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28176 | 3' | -54.5 | NC_005887.1 | + | 39780 | 0.66 | 0.677779 |
Target: 5'- -cGCGGCGCUCgc-GCcGAucguugcGCGCGUCg -3' miRNA: 3'- gaUGCUGCGAGaguCGuCU-------CGCGUAG- -5' |
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28176 | 3' | -54.5 | NC_005887.1 | + | 39912 | 0.66 | 0.644853 |
Target: 5'- aUACGguGCGCgcagaUCgAGCcGGGCGCGUCg -3' miRNA: 3'- gAUGC--UGCGag---AG-UCGuCUCGCGUAG- -5' |
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28176 | 3' | -54.5 | NC_005887.1 | + | 41103 | 0.73 | 0.266051 |
Target: 5'- aUGCGACGUUUUCGcguGCuGAGCGCcgCg -3' miRNA: 3'- gAUGCUGCGAGAGU---CGuCUCGCGuaG- -5' |
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28176 | 3' | -54.5 | NC_005887.1 | + | 42079 | 0.66 | 0.622067 |
Target: 5'- -gACGAgCGCUgUCGcGUGGGGCGCGa- -3' miRNA: 3'- gaUGCU-GCGAgAGU-CGUCUCGCGUag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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