miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28176 3' -54.5 NC_005887.1 + 12642 0.66 0.644853
Target:  5'- cCUGCGACGCga-CGGCgAGuggcuGCGCGUg -3'
miRNA:   3'- -GAUGCUGCGagaGUCG-UCu----CGCGUAg -5'
28176 3' -54.5 NC_005887.1 + 19380 0.69 0.457426
Target:  5'- -cGCGccAUGCUCgcgCAgcugccGCAGAGCGUAUCg -3'
miRNA:   3'- gaUGC--UGCGAGa--GU------CGUCUCGCGUAG- -5'
28176 3' -54.5 NC_005887.1 + 39423 0.68 0.532087
Target:  5'- -cGCGGCGCUUgcgCAGCuuGGcGGCgGCGUCg -3'
miRNA:   3'- gaUGCUGCGAGa--GUCG--UC-UCG-CGUAG- -5'
28176 3' -54.5 NC_005887.1 + 8405 0.68 0.554256
Target:  5'- -cGCGACGUgCUC-GCcGAGCGcCGUCg -3'
miRNA:   3'- gaUGCUGCGaGAGuCGuCUCGC-GUAG- -5'
28176 3' -54.5 NC_005887.1 + 14090 0.67 0.565444
Target:  5'- -gAUGAUGCUCgUCAGUGGugaAGCGCcgCu -3'
miRNA:   3'- gaUGCUGCGAG-AGUCGUC---UCGCGuaG- -5'
28176 3' -54.5 NC_005887.1 + 4361 0.67 0.587984
Target:  5'- -gACGAUGCgCUCuGCuGAGaGCGUCg -3'
miRNA:   3'- gaUGCUGCGaGAGuCGuCUCgCGUAG- -5'
28176 3' -54.5 NC_005887.1 + 34241 0.75 0.192081
Target:  5'- -aGCGGCGC-CUCGGC-GAGCGCGg- -3'
miRNA:   3'- gaUGCUGCGaGAGUCGuCUCGCGUag -5'
28176 3' -54.5 NC_005887.1 + 41103 0.73 0.266051
Target:  5'- aUGCGACGUUUUCGcguGCuGAGCGCcgCg -3'
miRNA:   3'- gAUGCUGCGAGAGU---CGuCUCGCGuaG- -5'
28176 3' -54.5 NC_005887.1 + 27404 0.7 0.398142
Target:  5'- uUGCGGCGCgUCguaCGGCAGcGCGCGg- -3'
miRNA:   3'- gAUGCUGCG-AGa--GUCGUCuCGCGUag -5'
28176 3' -54.5 NC_005887.1 + 28053 0.69 0.467763
Target:  5'- cCUGCGcuuGCGggUUCAGCGuGAGCGUGUCc -3'
miRNA:   3'- -GAUGC---UGCgaGAGUCGU-CUCGCGUAG- -5'
28176 3' -54.5 NC_005887.1 + 26407 0.67 0.565444
Target:  5'- gUGCGGCGCg--UGGCc-GGCGCAUCg -3'
miRNA:   3'- gAUGCUGCGagaGUCGucUCGCGUAG- -5'
28176 3' -54.5 NC_005887.1 + 2487 0.66 0.622067
Target:  5'- -cGCGAgGCgCUCAGCGguGAGCG-GUCg -3'
miRNA:   3'- gaUGCUgCGaGAGUCGU--CUCGCgUAG- -5'
28176 3' -54.5 NC_005887.1 + 2562 0.71 0.379503
Target:  5'- -gACGACGCgcgcaacgaUCGGCGcGAGCGCcgCg -3'
miRNA:   3'- gaUGCUGCGag-------AGUCGU-CUCGCGuaG- -5'
28176 3' -54.5 NC_005887.1 + 13798 0.67 0.599318
Target:  5'- -gGCGACGCcuacaaaUUCAGCAGcccGGCGCGc- -3'
miRNA:   3'- gaUGCUGCGa------GAGUCGUC---UCGCGUag -5'
28176 3' -54.5 NC_005887.1 + 39343 0.69 0.488788
Target:  5'- -cGCGGCGCUggCcGCAG-GCGCGUUg -3'
miRNA:   3'- gaUGCUGCGAgaGuCGUCuCGCGUAG- -5'
28176 3' -54.5 NC_005887.1 + 26280 0.72 0.327192
Target:  5'- gUGCGGCGCaacacCAGCAGgaAGCGUAUCg -3'
miRNA:   3'- gAUGCUGCGaga--GUCGUC--UCGCGUAG- -5'
28176 3' -54.5 NC_005887.1 + 28792 0.67 0.587984
Target:  5'- --uCGGCcuGCUCg-GGCGGcAGCGCAUCg -3'
miRNA:   3'- gauGCUG--CGAGagUCGUC-UCGCGUAG- -5'
28176 3' -54.5 NC_005887.1 + 7031 0.66 0.667589
Target:  5'- -cGCGGCGCgcggCAGUGGAGCGaugCa -3'
miRNA:   3'- gaUGCUGCGaga-GUCGUCUCGCguaG- -5'
28176 3' -54.5 NC_005887.1 + 29505 0.66 0.644853
Target:  5'- -gGCGGC-CUCgaCGGCGG-GCGCGUUg -3'
miRNA:   3'- gaUGCUGcGAGa-GUCGUCuCGCGUAG- -5'
28176 3' -54.5 NC_005887.1 + 42079 0.66 0.622067
Target:  5'- -gACGAgCGCUgUCGcGUGGGGCGCGa- -3'
miRNA:   3'- gaUGCU-GCGAgAGU-CGUCUCGCGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.