miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28178 3' -52.2 NC_005887.1 + 41932 0.66 0.785548
Target:  5'- cGGCUCGcAGCUGAgcugccCGGCguGCUCg -3'
miRNA:   3'- -UUGAGC-UCGACUaguuuaGCCG--CGAG- -5'
28178 3' -52.2 NC_005887.1 + 32781 0.67 0.731239
Target:  5'- cGGCUCGuGCgca--GGAUCGGCGCg- -3'
miRNA:   3'- -UUGAGCuCGacuagUUUAGCCGCGag -5'
28178 3' -52.2 NC_005887.1 + 31294 0.67 0.719988
Target:  5'- --gUCGAGCUcGAcCGGcAUCGGCGCa- -3'
miRNA:   3'- uugAGCUCGA-CUaGUU-UAGCCGCGag -5'
28178 3' -52.2 NC_005887.1 + 18931 0.67 0.719988
Target:  5'- cGGCUgcgaCGAGCUGAUCGAcgCGcUGCUg -3'
miRNA:   3'- -UUGA----GCUCGACUAGUUuaGCcGCGAg -5'
28178 3' -52.2 NC_005887.1 + 33819 0.68 0.674142
Target:  5'- cACgCGGGU--GUCAGGUCGGCGCg- -3'
miRNA:   3'- uUGaGCUCGacUAGUUUAGCCGCGag -5'
28178 3' -52.2 NC_005887.1 + 12891 0.68 0.674142
Target:  5'- uGCgCGAGCUGAUCGGcaCGGCGa-- -3'
miRNA:   3'- uUGaGCUCGACUAGUUuaGCCGCgag -5'
28178 3' -52.2 NC_005887.1 + 11534 0.68 0.650899
Target:  5'- --gUCaAGCUGAUCAGcagcUCGGCGCg- -3'
miRNA:   3'- uugAGcUCGACUAGUUu---AGCCGCGag -5'
28178 3' -52.2 NC_005887.1 + 37291 0.68 0.639242
Target:  5'- ---gCGGGCUGAUCuuc-CGGCGCg- -3'
miRNA:   3'- uugaGCUCGACUAGuuuaGCCGCGag -5'
28178 3' -52.2 NC_005887.1 + 35637 0.69 0.604274
Target:  5'- cGCUCGGGCUGAg-----CGGUGCg- -3'
miRNA:   3'- uUGAGCUCGACUaguuuaGCCGCGag -5'
28178 3' -52.2 NC_005887.1 + 39110 0.69 0.600785
Target:  5'- cAGCgCGAGCggcgcGGUCGAAUCGaacaucuucugcgaGCGCUCg -3'
miRNA:   3'- -UUGaGCUCGa----CUAGUUUAGC--------------CGCGAG- -5'
28178 3' -52.2 NC_005887.1 + 6807 0.69 0.592657
Target:  5'- cAugUCGAGCaGAcCA--UCGGCGCUg -3'
miRNA:   3'- -UugAGCUCGaCUaGUuuAGCCGCGAg -5'
28178 3' -52.2 NC_005887.1 + 38628 0.69 0.569545
Target:  5'- cAGCUUGcGCgGAUCGcGGUCGGCGCg- -3'
miRNA:   3'- -UUGAGCuCGaCUAGU-UUAGCCGCGag -5'
28178 3' -52.2 NC_005887.1 + 12289 0.69 0.558071
Target:  5'- cAGCUCGgcaAGgUGAUgGAGcUGGCGCUCg -3'
miRNA:   3'- -UUGAGC---UCgACUAgUUUaGCCGCGAG- -5'
28178 3' -52.2 NC_005887.1 + 27528 0.7 0.535329
Target:  5'- cGCggCGGGC-GGUCAugggCGGCGCUCc -3'
miRNA:   3'- uUGa-GCUCGaCUAGUuua-GCCGCGAG- -5'
28178 3' -52.2 NC_005887.1 + 12568 0.7 0.501863
Target:  5'- uGGCcCGAGCUGcgCGAcgCGGCGaucCUCg -3'
miRNA:   3'- -UUGaGCUCGACuaGUUuaGCCGC---GAG- -5'
28178 3' -52.2 NC_005887.1 + 5811 0.71 0.49091
Target:  5'- aGACggCG-GC-GAUCGAGUCGGCGCg- -3'
miRNA:   3'- -UUGa-GCuCGaCUAGUUUAGCCGCGag -5'
28178 3' -52.2 NC_005887.1 + 11580 0.71 0.448277
Target:  5'- --aUCGGGCU--UCAacccgaacaccgGAUCGGCGCUCg -3'
miRNA:   3'- uugAGCUCGAcuAGU------------UUAGCCGCGAG- -5'
28178 3' -52.2 NC_005887.1 + 21172 0.77 0.193939
Target:  5'- cGCUCGAGCUGGUCGAAcaacUCGGCa--- -3'
miRNA:   3'- uUGAGCUCGACUAGUUU----AGCCGcgag -5'
28178 3' -52.2 NC_005887.1 + 23984 0.78 0.178015
Target:  5'- uGCUCGAGCg---CGAggCGGCGCUCg -3'
miRNA:   3'- uUGAGCUCGacuaGUUuaGCCGCGAG- -5'
28178 3' -52.2 NC_005887.1 + 26678 0.78 0.178015
Target:  5'- cGGCggUGAGCUGGUCGAGcUCGGCGCg- -3'
miRNA:   3'- -UUGa-GCUCGACUAGUUU-AGCCGCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.