miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28178 5' -56.3 NC_005887.1 + 41737 0.67 0.574903
Target:  5'- uCCGAuc-CCGGCG-CG-CGGGCUCu- -3'
miRNA:   3'- -GGCUuacGGCCGCaGCuGCUCGAGcu -5'
28178 5' -56.3 NC_005887.1 + 946 0.67 0.574903
Target:  5'- cCCGAGUGCuuCGGCGaaGGCGuGCagcaCGAg -3'
miRNA:   3'- -GGCUUACG--GCCGCagCUGCuCGa---GCU- -5'
28178 5' -56.3 NC_005887.1 + 29776 0.67 0.564103
Target:  5'- gCGAGgaucGCC-GCGUCG-CGcAGCUCGGg -3'
miRNA:   3'- gGCUUa---CGGcCGCAGCuGC-UCGAGCU- -5'
28178 5' -56.3 NC_005887.1 + 26487 0.67 0.564103
Target:  5'- aCGGgcAUGCCGGCcgcuuccUCGACGAuuucCUCGAg -3'
miRNA:   3'- gGCU--UACGGCCGc------AGCUGCUc---GAGCU- -5'
28178 5' -56.3 NC_005887.1 + 7411 0.67 0.553356
Target:  5'- gCCGAGUucgaaGCCGGCGaCGGCaAGUUCc- -3'
miRNA:   3'- -GGCUUA-----CGGCCGCaGCUGcUCGAGcu -5'
28178 5' -56.3 NC_005887.1 + 26918 0.67 0.553356
Target:  5'- cCCGAGUcGCUGGCcgccGUCGACGAacccuGCUgGc -3'
miRNA:   3'- -GGCUUA-CGGCCG----CAGCUGCU-----CGAgCu -5'
28178 5' -56.3 NC_005887.1 + 10469 0.67 0.553356
Target:  5'- aCGGuuacgGCCGGCG-CGAUcacGCUCGAc -3'
miRNA:   3'- gGCUua---CGGCCGCaGCUGcu-CGAGCU- -5'
28178 5' -56.3 NC_005887.1 + 10307 0.67 0.552285
Target:  5'- uCCGucUGCgGGCGUCGGugccccgcacaucCGAGaUCGAa -3'
miRNA:   3'- -GGCuuACGgCCGCAGCU-------------GCUCgAGCU- -5'
28178 5' -56.3 NC_005887.1 + 41204 0.67 0.549075
Target:  5'- uCCGAc--CCGcGCGUCGucgugcccgugacCGAGCUCGAc -3'
miRNA:   3'- -GGCUuacGGC-CGCAGCu------------GCUCGAGCU- -5'
28178 5' -56.3 NC_005887.1 + 32855 0.67 0.542672
Target:  5'- uUCGGcagcAUGCCGGgGUCGGCcGGgUCGu -3'
miRNA:   3'- -GGCU----UACGGCCgCAGCUGcUCgAGCu -5'
28178 5' -56.3 NC_005887.1 + 13389 0.67 0.542672
Target:  5'- gCUGAagGCCGGCG-CGGCGGaCgUCGGc -3'
miRNA:   3'- -GGCUuaCGGCCGCaGCUGCUcG-AGCU- -5'
28178 5' -56.3 NC_005887.1 + 36306 0.67 0.542672
Target:  5'- gCCGAucUGCgCGGCgGUCGACGccgcgcaCUCGAu -3'
miRNA:   3'- -GGCUu-ACG-GCCG-CAGCUGCuc-----GAGCU- -5'
28178 5' -56.3 NC_005887.1 + 8462 0.67 0.541607
Target:  5'- aUCGAGcGcCCGGCGcaaccgcUCGGCGAcgacacgugGCUCGAg -3'
miRNA:   3'- -GGCUUaC-GGCCGC-------AGCUGCU---------CGAGCU- -5'
28178 5' -56.3 NC_005887.1 + 20554 0.67 0.541607
Target:  5'- gCCGcggacgucguguuGAUGCCGGCGaUGAU--GCUCGAa -3'
miRNA:   3'- -GGC-------------UUACGGCCGCaGCUGcuCGAGCU- -5'
28178 5' -56.3 NC_005887.1 + 41639 0.68 0.532056
Target:  5'- aCGAGaucaGCUGGUucacGUCGGCGAGCagcaUCGAc -3'
miRNA:   3'- gGCUUa---CGGCCG----CAGCUGCUCG----AGCU- -5'
28178 5' -56.3 NC_005887.1 + 1576 0.68 0.532056
Target:  5'- cUCGAccGCCGGC-UCGGCG-GCgcgCGGc -3'
miRNA:   3'- -GGCUuaCGGCCGcAGCUGCuCGa--GCU- -5'
28178 5' -56.3 NC_005887.1 + 31963 0.68 0.532056
Target:  5'- cCCGAG-GCCGGCGauagUCGACGucGGCa--- -3'
miRNA:   3'- -GGCUUaCGGCCGC----AGCUGC--UCGagcu -5'
28178 5' -56.3 NC_005887.1 + 28035 0.68 0.521516
Target:  5'- cCUGcuUGUCGGCGUCGgccugcgcuuGCGGGUUCa- -3'
miRNA:   3'- -GGCuuACGGCCGCAGC----------UGCUCGAGcu -5'
28178 5' -56.3 NC_005887.1 + 41491 0.68 0.521516
Target:  5'- cCCGcAUGgcaCCGGCucgaacggcaaGUCGACGGuGCUCGGc -3'
miRNA:   3'- -GGCuUAC---GGCCG-----------CAGCUGCU-CGAGCU- -5'
28178 5' -56.3 NC_005887.1 + 40192 0.68 0.510018
Target:  5'- gCCGAaguccAUGCCGauccagaGCGgcugCGAcuucaCGAGCUCGAa -3'
miRNA:   3'- -GGCU-----UACGGC-------CGCa---GCU-----GCUCGAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.