miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2818 3' -54.2 NC_001491.2 + 121285 0.68 0.913375
Target:  5'- aCC-CACCCAUCAAUUaguggGCCcUCCCc -3'
miRNA:   3'- -GGaGUGGGUGGUUAGgga--UGGuAGGG- -5'
2818 3' -54.2 NC_001491.2 + 145863 0.68 0.913375
Target:  5'- cCCUC-CCCAUCGGUgguggauccgaCCCggGCCAggggUCCCc -3'
miRNA:   3'- -GGAGuGGGUGGUUA-----------GGGa-UGGU----AGGG- -5'
2818 3' -54.2 NC_001491.2 + 78249 0.68 0.907351
Target:  5'- cCCUCACCCGCagggaggaugaGAUCUgcgUACCGUCUa -3'
miRNA:   3'- -GGAGUGGGUGg----------UUAGGg--AUGGUAGGg -5'
2818 3' -54.2 NC_001491.2 + 115784 0.68 0.907351
Target:  5'- uCCUCGUCCGCCcggggguacGAUCCCUcgggGCCGgucgacagCCCu -3'
miRNA:   3'- -GGAGUGGGUGG---------UUAGGGA----UGGUa-------GGG- -5'
2818 3' -54.2 NC_001491.2 + 146339 0.68 0.906736
Target:  5'- gCCUC-CCCGCCucGUCUCUcggguagGCCAUgUCCg -3'
miRNA:   3'- -GGAGuGGGUGGu-UAGGGA-------UGGUA-GGG- -5'
2818 3' -54.2 NC_001491.2 + 74246 0.68 0.900452
Target:  5'- cCCUCGcuCCCGCCGcgCCgCcGCCGcagcagcccucgcUCCCg -3'
miRNA:   3'- -GGAGU--GGGUGGUuaGG-GaUGGU-------------AGGG- -5'
2818 3' -54.2 NC_001491.2 + 74182 0.68 0.900452
Target:  5'- cCCUCGcuCCCGCCGcgCCgCcGCCGcagcagcccucgcUCCCg -3'
miRNA:   3'- -GGAGU--GGGUGGUuaGG-GaUGGU-------------AGGG- -5'
2818 3' -54.2 NC_001491.2 + 74118 0.68 0.900452
Target:  5'- cCCUCGcuCCCGCCGcgCCgCcGCCGcagcagcccucgcUCCCg -3'
miRNA:   3'- -GGAGU--GGGUGGUuaGG-GaUGGU-------------AGGG- -5'
2818 3' -54.2 NC_001491.2 + 74054 0.68 0.900452
Target:  5'- cCCUCGcuCCCGCCGcgCCgCcGCCGcagcagcccucgcUCCCg -3'
miRNA:   3'- -GGAGU--GGGUGGUuaGG-GaUGGU-------------AGGG- -5'
2818 3' -54.2 NC_001491.2 + 73990 0.68 0.900452
Target:  5'- cCCUCGcuCCCGCCGcgCCgCcGCCGcagcagcccucgcUCCCg -3'
miRNA:   3'- -GGAGU--GGGUGGUuaGG-GaUGGU-------------AGGG- -5'
2818 3' -54.2 NC_001491.2 + 82044 0.68 0.894597
Target:  5'- --cCACCCACCAA-CCgUACCAauaaCCa -3'
miRNA:   3'- ggaGUGGGUGGUUaGGgAUGGUag--GG- -5'
2818 3' -54.2 NC_001491.2 + 82550 0.68 0.894597
Target:  5'- uCCUCGCCCACaGAUCCUagGCgCAgcuugUCCUc -3'
miRNA:   3'- -GGAGUGGGUGgUUAGGGa-UG-GU-----AGGG- -5'
2818 3' -54.2 NC_001491.2 + 3112 0.68 0.894597
Target:  5'- aCCUCAucUCCACCAgggagGUCUaCUACCcUUCCg -3'
miRNA:   3'- -GGAGU--GGGUGGU-----UAGG-GAUGGuAGGG- -5'
2818 3' -54.2 NC_001491.2 + 24206 0.69 0.887873
Target:  5'- uCCUCACuUCAUCGAUCuuacacauugaCCUGCUAaCCCg -3'
miRNA:   3'- -GGAGUG-GGUGGUUAG-----------GGAUGGUaGGG- -5'
2818 3' -54.2 NC_001491.2 + 118713 0.69 0.880923
Target:  5'- aCCggcCACCCGCCAAccuUCCCUucuCgGUCUUc -3'
miRNA:   3'- -GGa--GUGGGUGGUU---AGGGAu--GgUAGGG- -5'
2818 3' -54.2 NC_001491.2 + 124142 0.69 0.866362
Target:  5'- cUCUCcCCCGCuCGGccucCCCUACCGcucUCCCc -3'
miRNA:   3'- -GGAGuGGGUG-GUUa---GGGAUGGU---AGGG- -5'
2818 3' -54.2 NC_001491.2 + 123926 0.69 0.866362
Target:  5'- cUCUCcCCCGCuCGGccucCCCUACCGcucUCCCc -3'
miRNA:   3'- -GGAGuGGGUG-GUUa---GGGAUGGU---AGGG- -5'
2818 3' -54.2 NC_001491.2 + 123980 0.69 0.866362
Target:  5'- cUCUCcCCCGCuCGGccucCCCUACCGcucUCCCc -3'
miRNA:   3'- -GGAGuGGGUG-GUUa---GGGAUGGU---AGGG- -5'
2818 3' -54.2 NC_001491.2 + 124034 0.69 0.866362
Target:  5'- cUCUCcCCCGCuCGGccucCCCUACCGcucUCCCc -3'
miRNA:   3'- -GGAGuGGGUG-GUUa---GGGAUGGU---AGGG- -5'
2818 3' -54.2 NC_001491.2 + 124088 0.69 0.866362
Target:  5'- cUCUCcCCCGCuCGGccucCCCUACCGcucUCCCc -3'
miRNA:   3'- -GGAGuGGGUG-GUUa---GGGAUGGU---AGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.