miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2818 5' -54.9 NC_001491.2 + 124904 0.68 0.885619
Target:  5'- cCGGucGAGGGGGugguGGCCGGaGAGGUg -3'
miRNA:   3'- -GCCu-CUCUCUCuu--UUGGCCgCUCCGg -5'
2818 5' -54.9 NC_001491.2 + 147042 0.68 0.871393
Target:  5'- gCGGAGccGGAGAAGggcucgccGCCGGgCGAGGaCg -3'
miRNA:   3'- -GCCUCucUCUCUUU--------UGGCC-GCUCCgG- -5'
2818 5' -54.9 NC_001491.2 + 90386 0.68 0.863957
Target:  5'- aGGAcGGAGGGAGGGCCGcuGCGAGaaaGUCu -3'
miRNA:   3'- gCCUcUCUCUCUUUUGGC--CGCUC---CGG- -5'
2818 5' -54.9 NC_001491.2 + 16969 0.69 0.856312
Target:  5'- cCGGAGAGugcuauGAGggGcUCuGCGGGGCg -3'
miRNA:   3'- -GCCUCUCu-----CUCuuUuGGcCGCUCCGg -5'
2818 5' -54.9 NC_001491.2 + 140242 0.69 0.856312
Target:  5'- gCGGGGAcgGGGAcGggGGCgGGCGcggacGGGCUa -3'
miRNA:   3'- -GCCUCU--CUCU-CuuUUGgCCGC-----UCCGG- -5'
2818 5' -54.9 NC_001491.2 + 147422 0.69 0.848464
Target:  5'- gCGGAcGAG-GAGAAGGaggccgaggcuCCGGCcuGGGCCg -3'
miRNA:   3'- -GCCU-CUCuCUCUUUU-----------GGCCGc-UCCGG- -5'
2818 5' -54.9 NC_001491.2 + 145107 0.69 0.840421
Target:  5'- cCGGGGuGccGGGGAcccuccgcCCGGgGAGGCCg -3'
miRNA:   3'- -GCCUCuC--UCUCUuuu-----GGCCgCUCCGG- -5'
2818 5' -54.9 NC_001491.2 + 1498 0.69 0.815188
Target:  5'- uGGAGAuGGAGAcaGAGgaGGCGcGGCCc -3'
miRNA:   3'- gCCUCUcUCUCU--UUUggCCGCuCCGG- -5'
2818 5' -54.9 NC_001491.2 + 121486 0.69 0.815188
Target:  5'- gGGAcGGGAuGAGggGGCUGGUGGacGGCg -3'
miRNA:   3'- gCCU-CUCU-CUCuuUUGGCCGCU--CCGg -5'
2818 5' -54.9 NC_001491.2 + 116893 0.7 0.806434
Target:  5'- gCGGAcauggccuacccGAGAGAcGAGGCgGG-GAGGCCg -3'
miRNA:   3'- -GCCU------------CUCUCUcUUUUGgCCgCUCCGG- -5'
2818 5' -54.9 NC_001491.2 + 117341 0.7 0.797523
Target:  5'- uGGGGAGGGugcgauacgGGggGACCGGgGAcucgcgggacgGGCUg -3'
miRNA:   3'- gCCUCUCUC---------UCuuUUGGCCgCU-----------CCGG- -5'
2818 5' -54.9 NC_001491.2 + 111218 0.7 0.787549
Target:  5'- aGGGcgcagacGGGGGAGAAGGCCGGCugccccAGGaCCa -3'
miRNA:   3'- gCCU-------CUCUCUCUUUUGGCCGc-----UCC-GG- -5'
2818 5' -54.9 NC_001491.2 + 143382 0.71 0.731468
Target:  5'- gGGAGGGGGAGggGGaaaGGUG-GGCg -3'
miRNA:   3'- gCCUCUCUCUCuuUUgg-CCGCuCCGg -5'
2818 5' -54.9 NC_001491.2 + 19537 0.71 0.725566
Target:  5'- uGGGGAGGacagcaaaacuguccGGGAAAACCGGaGGGGUUg -3'
miRNA:   3'- gCCUCUCU---------------CUCUUUUGGCCgCUCCGG- -5'
2818 5' -54.9 NC_001491.2 + 79525 0.71 0.721615
Target:  5'- gGGGGAGGGGGAuguuACCguugaugaGGCGuggcauGGCCa -3'
miRNA:   3'- gCCUCUCUCUCUuu--UGG--------CCGCu-----CCGG- -5'
2818 5' -54.9 NC_001491.2 + 125573 0.72 0.701687
Target:  5'- uCGGAGGGGGGGGAuGCgCGcccCGAGGCg -3'
miRNA:   3'- -GCCUCUCUCUCUUuUG-GCc--GCUCCGg -5'
2818 5' -54.9 NC_001491.2 + 140490 0.72 0.691631
Target:  5'- -aGAGGGAGGGAGAGCUaugggaagGGUGGGGUg -3'
miRNA:   3'- gcCUCUCUCUCUUUUGG--------CCGCUCCGg -5'
2818 5' -54.9 NC_001491.2 + 144520 0.72 0.661203
Target:  5'- uCGGAagaccGAGaAGGGAAGGuuGGCGGguGGCCg -3'
miRNA:   3'- -GCCU-----CUC-UCUCUUUUggCCGCU--CCGG- -5'
2818 5' -54.9 NC_001491.2 + 145321 0.73 0.630563
Target:  5'- cCGGAG-GAcggcccGGGAGAGCCGGC--GGCCg -3'
miRNA:   3'- -GCCUCuCU------CUCUUUUGGCCGcuCCGG- -5'
2818 5' -54.9 NC_001491.2 + 53231 0.73 0.620341
Target:  5'- aCGGAG-GcGGGAAGcCCGGCGucgggaGGGCCg -3'
miRNA:   3'- -GCCUCuCuCUCUUUuGGCCGC------UCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.