miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28180 5' -58.6 NC_005887.1 + 21085 0.66 0.466437
Target:  5'- gGCGUUGgcuugaacgguaucGGcGCGGUCGCCGcaaacacGGUGCu -3'
miRNA:   3'- gCGCAGC--------------UC-CGCUAGCGGCaa-----CCGCG- -5'
28180 5' -58.6 NC_005887.1 + 35055 0.67 0.459556
Target:  5'- aCGCGaggUCGcuGCcGUCGUCGgcgGGCGCg -3'
miRNA:   3'- -GCGC---AGCucCGcUAGCGGCaa-CCGCG- -5'
28180 5' -58.6 NC_005887.1 + 36925 0.67 0.459556
Target:  5'- gCGCGUgGucGCGccgGUCGCUGc-GGCGCc -3'
miRNA:   3'- -GCGCAgCucCGC---UAGCGGCaaCCGCG- -5'
28180 5' -58.6 NC_005887.1 + 37213 0.67 0.459556
Target:  5'- cCGaCGUCGGGcagcGCGGUCauGCCGagcUUGGCGa -3'
miRNA:   3'- -GC-GCAGCUC----CGCUAG--CGGC---AACCGCg -5'
28180 5' -58.6 NC_005887.1 + 41451 0.67 0.459556
Target:  5'- aCGCGgaucgaagcCGAGGCcgccuGAcUCGuCCGgcGGCGCg -3'
miRNA:   3'- -GCGCa--------GCUCCG-----CU-AGC-GGCaaCCGCG- -5'
28180 5' -58.6 NC_005887.1 + 14606 0.67 0.459556
Target:  5'- aCGCGUac-GGCcgucggCGCCGUcgagGGCGCg -3'
miRNA:   3'- -GCGCAgcuCCGcua---GCGGCAa---CCGCG- -5'
28180 5' -58.6 NC_005887.1 + 28312 0.67 0.4402
Target:  5'- gGCaUCGucucAGGCug-CGCCGgcGGCGCg -3'
miRNA:   3'- gCGcAGC----UCCGcuaGCGGCaaCCGCG- -5'
28180 5' -58.6 NC_005887.1 + 33095 0.67 0.4402
Target:  5'- cCGUGcacagauaGAcGCGAUCGCCGacgcGGCGCa -3'
miRNA:   3'- -GCGCag------CUcCGCUAGCGGCaa--CCGCG- -5'
28180 5' -58.6 NC_005887.1 + 23274 0.67 0.430698
Target:  5'- aGC-UCGuGGCGGUUGCCGcagcccGCGCc -3'
miRNA:   3'- gCGcAGCuCCGCUAGCGGCaac---CGCG- -5'
28180 5' -58.6 NC_005887.1 + 39148 0.67 0.430697
Target:  5'- aGCGcUCGcGGCccuucUCGCUGUccgGGCGCg -3'
miRNA:   3'- gCGC-AGCuCCGcu---AGCGGCAa--CCGCG- -5'
28180 5' -58.6 NC_005887.1 + 24120 0.67 0.421316
Target:  5'- gGCGUggcCGAGGCGAUCaCCuucGuGCGCa -3'
miRNA:   3'- gCGCA---GCUCCGCUAGcGGcaaC-CGCG- -5'
28180 5' -58.6 NC_005887.1 + 30247 0.67 0.421316
Target:  5'- --gGUCGgacacguacAGGCGcUUGCCGUccGGCGCg -3'
miRNA:   3'- gcgCAGC---------UCCGCuAGCGGCAa-CCGCG- -5'
28180 5' -58.6 NC_005887.1 + 40868 0.67 0.421316
Target:  5'- cCGCG-CGAGcGCcgcaCGCCGUcGGCGUc -3'
miRNA:   3'- -GCGCaGCUC-CGcua-GCGGCAaCCGCG- -5'
28180 5' -58.6 NC_005887.1 + 12559 0.67 0.421316
Target:  5'- gGCGUCGAcGGC---CGCCGgcauGCGCa -3'
miRNA:   3'- gCGCAGCU-CCGcuaGCGGCaac-CGCG- -5'
28180 5' -58.6 NC_005887.1 + 28303 0.67 0.415747
Target:  5'- aGCGUCGuGGCGAcuugUUGCUGgaagccuguugucGGCGUc -3'
miRNA:   3'- gCGCAGCuCCGCU----AGCGGCaa-----------CCGCG- -5'
28180 5' -58.6 NC_005887.1 + 27909 0.67 0.412059
Target:  5'- aCG-GUCu-GGuCGAUCGCgGUUGcGCGCg -3'
miRNA:   3'- -GCgCAGcuCC-GCUAGCGgCAAC-CGCG- -5'
28180 5' -58.6 NC_005887.1 + 39917 0.68 0.402929
Target:  5'- gCGCG-CGAGGUGucauUCGUC---GGCGCg -3'
miRNA:   3'- -GCGCaGCUCCGCu---AGCGGcaaCCGCG- -5'
28180 5' -58.6 NC_005887.1 + 36976 0.68 0.385059
Target:  5'- gGCGUCGcgcGGGuCGAgcUCGCCGgcgagcacGCGCa -3'
miRNA:   3'- gCGCAGC---UCC-GCU--AGCGGCaac-----CGCG- -5'
28180 5' -58.6 NC_005887.1 + 17280 0.68 0.385059
Target:  5'- aGaCGUCG-GGCGG-CGCCGcgcGCGCa -3'
miRNA:   3'- gC-GCAGCuCCGCUaGCGGCaacCGCG- -5'
28180 5' -58.6 NC_005887.1 + 14564 0.68 0.367721
Target:  5'- uGCGUCGGcGCcGUCGUCa-UGGCGCu -3'
miRNA:   3'- gCGCAGCUcCGcUAGCGGcaACCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.