miRNA display CGI


Results 41 - 60 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2819 3' -52.9 NC_001491.2 + 101775 0.68 0.925018
Target:  5'- cCUCGcugGAGAGCUGCGUGgACGaGCGUg -3'
miRNA:   3'- aGAGC---UUUUUGGCGCGUgUGCgCGCG- -5'
2819 3' -52.9 NC_001491.2 + 114646 0.72 0.780212
Target:  5'- cUUUGAGGAgggcGCCGCGCAgagcCAC-CGCGCg -3'
miRNA:   3'- aGAGCUUUU----UGGCGCGU----GUGcGCGCG- -5'
2819 3' -52.9 NC_001491.2 + 114867 0.72 0.770745
Target:  5'- uUCgCGAgggccGAGGCCGCGUu--CGCGCGCc -3'
miRNA:   3'- -AGaGCU-----UUUUGGCGCGuguGCGCGCG- -5'
2819 3' -52.9 NC_001491.2 + 114951 0.66 0.980652
Target:  5'- -gUCGccugcGCCGUGCGCugGCcccgggaGCGCc -3'
miRNA:   3'- agAGCuuuu-UGGCGCGUGugCG-------CGCG- -5'
2819 3' -52.9 NC_001491.2 + 115888 0.79 0.422105
Target:  5'- cCUCGGAcGACCGUGCcaucCACGgGCGCc -3'
miRNA:   3'- aGAGCUUuUUGGCGCGu---GUGCgCGCG- -5'
2819 3' -52.9 NC_001491.2 + 116403 0.71 0.833829
Target:  5'- gCUcCGAcGAGCUGCGCcuCGCGgUGCGCg -3'
miRNA:   3'- aGA-GCUuUUUGGCGCGu-GUGC-GCGCG- -5'
2819 3' -52.9 NC_001491.2 + 116645 0.69 0.919411
Target:  5'- gCUCGggGAcGCCuGCGUGCugGCcUGCc -3'
miRNA:   3'- aGAGCuuUU-UGG-CGCGUGugCGcGCG- -5'
2819 3' -52.9 NC_001491.2 + 118653 0.7 0.858203
Target:  5'- uUCUCGAccccGAAGCCGgaGCuaGCACGCcauggccagccaGCGCa -3'
miRNA:   3'- -AGAGCU----UUUUGGCg-CG--UGUGCG------------CGCG- -5'
2819 3' -52.9 NC_001491.2 + 119640 0.66 0.976225
Target:  5'- --gCGAucacGAACCcCGUugGCGCGaCGCg -3'
miRNA:   3'- agaGCUu---UUUGGcGCGugUGCGC-GCG- -5'
2819 3' -52.9 NC_001491.2 + 120757 0.67 0.957426
Target:  5'- gUCUCGGGAG--CGCGCaugGCAC-CGUGCc -3'
miRNA:   3'- -AGAGCUUUUugGCGCG---UGUGcGCGCG- -5'
2819 3' -52.9 NC_001491.2 + 121571 0.73 0.72169
Target:  5'- --cCGggGAGCCucGCGgGCACGCGCa- -3'
miRNA:   3'- agaGCuuUUUGG--CGCgUGUGCGCGcg -5'
2819 3' -52.9 NC_001491.2 + 122870 0.76 0.546837
Target:  5'- --cCGGGAGAUCGgGCGCACugauuGCGCGCg -3'
miRNA:   3'- agaGCUUUUUGGCgCGUGUG-----CGCGCG- -5'
2819 3' -52.9 NC_001491.2 + 122929 0.68 0.934992
Target:  5'- -aUCGggGAGCCGUuguggacguggccGUACGCGC-CGUc -3'
miRNA:   3'- agAGCuuUUUGGCG-------------CGUGUGCGcGCG- -5'
2819 3' -52.9 NC_001491.2 + 123036 0.68 0.935493
Target:  5'- --gCGGcagcGAGACCGCGUGCGC-CGCGg -3'
miRNA:   3'- agaGCU----UUUUGGCGCGUGUGcGCGCg -5'
2819 3' -52.9 NC_001491.2 + 123158 0.69 0.901124
Target:  5'- -gUCGcAGAACaUGCgGUACACGCGCGg -3'
miRNA:   3'- agAGCuUUUUG-GCG-CGUGUGCGCGCg -5'
2819 3' -52.9 NC_001491.2 + 123384 1.13 0.003597
Target:  5'- gUCUCGAAAAACCGCGCACACGCGCGCu -3'
miRNA:   3'- -AGAGCUUUUUGGCGCGUGUGCGCGCG- -5'
2819 3' -52.9 NC_001491.2 + 123536 0.66 0.980866
Target:  5'- gCUgGAGAGggagcuugcgGCCGCGgGCGCGCagguaCGCc -3'
miRNA:   3'- aGAgCUUUU----------UGGCGCgUGUGCGc----GCG- -5'
2819 3' -52.9 NC_001491.2 + 124458 0.72 0.807757
Target:  5'- --cCGc--AGCCGCGCGCACGUGUcuGCa -3'
miRNA:   3'- agaGCuuuUUGGCGCGUGUGCGCG--CG- -5'
2819 3' -52.9 NC_001491.2 + 124924 0.66 0.973617
Target:  5'- --gCGAGGuGCCGUGC-CGCGUGC-Cg -3'
miRNA:   3'- agaGCUUUuUGGCGCGuGUGCGCGcG- -5'
2819 3' -52.9 NC_001491.2 + 125521 0.66 0.973617
Target:  5'- gCUCGGuccacGGCCGC-CGC-CGCGaCGCc -3'
miRNA:   3'- aGAGCUuu---UUGGCGcGUGuGCGC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.