miRNA display CGI


Results 41 - 60 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2819 3' -52.9 NC_001491.2 + 22849 0.66 0.978639
Target:  5'- aCUcCGAAucuAACUacCGCACACG-GCGCg -3'
miRNA:   3'- aGA-GCUUu--UUGGc-GCGUGUGCgCGCG- -5'
2819 3' -52.9 NC_001491.2 + 114951 0.66 0.980652
Target:  5'- -gUCGccugcGCCGUGCGCugGCcccgggaGCGCc -3'
miRNA:   3'- agAGCuuuu-UGGCGCGUGugCG-------CGCG- -5'
2819 3' -52.9 NC_001491.2 + 123536 0.66 0.980866
Target:  5'- gCUgGAGAGggagcuugcgGCCGCGgGCGCGCagguaCGCc -3'
miRNA:   3'- aGAgCUUUU----------UGGCGCgUGUGCGc----GCG- -5'
2819 3' -52.9 NC_001491.2 + 146844 0.66 0.980866
Target:  5'- gUC-CGGgccaccaccAGAACgGCGCGCAcCGCgagGCGCa -3'
miRNA:   3'- -AGaGCU---------UUUUGgCGCGUGU-GCG---CGCG- -5'
2819 3' -52.9 NC_001491.2 + 84838 0.66 0.980866
Target:  5'- gUC-CGcuGGAACUGUcgGCACAaGCGCGCu -3'
miRNA:   3'- -AGaGCu-UUUUGGCG--CGUGUgCGCGCG- -5'
2819 3' -52.9 NC_001491.2 + 40214 0.66 0.970808
Target:  5'- cCUCGGAAGACaCGUGU-UugGCG-GCg -3'
miRNA:   3'- aGAGCUUUUUG-GCGCGuGugCGCgCG- -5'
2819 3' -52.9 NC_001491.2 + 65775 0.66 0.970808
Target:  5'- --cCGGAGAgcgcucACCGCGCcCAgGCgaGCGCa -3'
miRNA:   3'- agaGCUUUU------UGGCGCGuGUgCG--CGCG- -5'
2819 3' -52.9 NC_001491.2 + 30882 0.68 0.944987
Target:  5'- -aUgGAGGAACCG-GCuaugGCGCGCGUGUu -3'
miRNA:   3'- agAgCUUUUUGGCgCG----UGUGCGCGCG- -5'
2819 3' -52.9 NC_001491.2 + 68218 0.68 0.949371
Target:  5'- gCUCgGAAAggUCGgGUACgaguucaacgGCGCGCGUc -3'
miRNA:   3'- aGAG-CUUUuuGGCgCGUG----------UGCGCGCG- -5'
2819 3' -52.9 NC_001491.2 + 14175 0.68 0.949371
Target:  5'- cCUCuggGAAGGGCuCGuCGC-CAUGCGCGUu -3'
miRNA:   3'- aGAG---CUUUUUG-GC-GCGuGUGCGCGCG- -5'
2819 3' -52.9 NC_001491.2 + 141659 0.68 0.949371
Target:  5'- -aUCGAc--GCCGUGCGCGUGCcCGCg -3'
miRNA:   3'- agAGCUuuuUGGCGCGUGUGCGcGCG- -5'
2819 3' -52.9 NC_001491.2 + 139860 0.68 0.949371
Target:  5'- gCUCGcgc--CCGCagauguacgaGCGCGCGUGUGCg -3'
miRNA:   3'- aGAGCuuuuuGGCG----------CGUGUGCGCGCG- -5'
2819 3' -52.9 NC_001491.2 + 64730 0.67 0.957426
Target:  5'- gCUgGGGAAACCGCG-GCcucgGCGUGgGCa -3'
miRNA:   3'- aGAgCUUUUUGGCGCgUG----UGCGCgCG- -5'
2819 3' -52.9 NC_001491.2 + 4730 0.67 0.957426
Target:  5'- cCUCGAGGcgauagaCGCGCACAaGCG-GCg -3'
miRNA:   3'- aGAGCUUUuug----GCGCGUGUgCGCgCG- -5'
2819 3' -52.9 NC_001491.2 + 120757 0.67 0.957426
Target:  5'- gUCUCGGGAG--CGCGCaugGCAC-CGUGCc -3'
miRNA:   3'- -AGAGCUUUUugGCGCG---UGUGcGCGCG- -5'
2819 3' -52.9 NC_001491.2 + 72925 0.67 0.961105
Target:  5'- --gCGAu--GCCGUGCACAUaGcCGUGCa -3'
miRNA:   3'- agaGCUuuuUGGCGCGUGUG-C-GCGCG- -5'
2819 3' -52.9 NC_001491.2 + 86164 0.67 0.964558
Target:  5'- gCUCGggGGcgcGCUGCGC-CACGCugaugaugcaGuCGCg -3'
miRNA:   3'- aGAGCuuUU---UGGCGCGuGUGCG----------C-GCG- -5'
2819 3' -52.9 NC_001491.2 + 90267 0.67 0.964558
Target:  5'- --cCGAu--GCCGaggcuaGCuuGCGCGCGCa -3'
miRNA:   3'- agaGCUuuuUGGCg-----CGugUGCGCGCG- -5'
2819 3' -52.9 NC_001491.2 + 28386 0.67 0.964558
Target:  5'- aUUUGAucAGCCGCGacgaggcgaucCACACuCGCGCc -3'
miRNA:   3'- aGAGCUuuUUGGCGC-----------GUGUGcGCGCG- -5'
2819 3' -52.9 NC_001491.2 + 82751 0.67 0.96779
Target:  5'- --aCcAGAGACCGCGC-CACGC-CGUu -3'
miRNA:   3'- agaGcUUUUUGGCGCGuGUGCGcGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.