miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2819 3' -52.9 NC_001491.2 + 72925 0.67 0.961105
Target:  5'- --gCGAu--GCCGUGCACAUaGcCGUGCa -3'
miRNA:   3'- agaGCUuuuUGGCGCGUGUG-C-GCGCG- -5'
2819 3' -52.9 NC_001491.2 + 120757 0.67 0.957426
Target:  5'- gUCUCGGGAG--CGCGCaugGCAC-CGUGCc -3'
miRNA:   3'- -AGAGCUUUUugGCGCG---UGUGcGCGCG- -5'
2819 3' -52.9 NC_001491.2 + 4730 0.67 0.957426
Target:  5'- cCUCGAGGcgauagaCGCGCACAaGCG-GCg -3'
miRNA:   3'- aGAGCUUUuug----GCGCGUGUgCGCgCG- -5'
2819 3' -52.9 NC_001491.2 + 64730 0.67 0.957426
Target:  5'- gCUgGGGAAACCGCG-GCcucgGCGUGgGCa -3'
miRNA:   3'- aGAgCUUUUUGGCGCgUG----UGCGCgCG- -5'
2819 3' -52.9 NC_001491.2 + 68218 0.68 0.949371
Target:  5'- gCUCgGAAAggUCGgGUACgaguucaacgGCGCGCGUc -3'
miRNA:   3'- aGAG-CUUUuuGGCgCGUG----------UGCGCGCG- -5'
2819 3' -52.9 NC_001491.2 + 14175 0.68 0.949371
Target:  5'- cCUCuggGAAGGGCuCGuCGC-CAUGCGCGUu -3'
miRNA:   3'- aGAG---CUUUUUG-GC-GCGuGUGCGCGCG- -5'
2819 3' -52.9 NC_001491.2 + 141659 0.68 0.949371
Target:  5'- -aUCGAc--GCCGUGCGCGUGCcCGCg -3'
miRNA:   3'- agAGCUuuuUGGCGCGUGUGCGcGCG- -5'
2819 3' -52.9 NC_001491.2 + 139860 0.68 0.949371
Target:  5'- gCUCGcgc--CCGCagauguacgaGCGCGCGUGUGCg -3'
miRNA:   3'- aGAGCuuuuuGGCG----------CGUGUGCGCGCG- -5'
2819 3' -52.9 NC_001491.2 + 30882 0.68 0.944987
Target:  5'- -aUgGAGGAACCG-GCuaugGCGCGCGUGUu -3'
miRNA:   3'- agAgCUUUUUGGCgCG----UGUGCGCGCG- -5'
2819 3' -52.9 NC_001491.2 + 138775 0.68 0.944987
Target:  5'- cUUCGggGuuuuCUGCagACACGUGCGCg -3'
miRNA:   3'- aGAGCuuUuu--GGCGcgUGUGCGCGCG- -5'
2819 3' -52.9 NC_001491.2 + 141793 0.68 0.944987
Target:  5'- --aCGGAcAGCCGUGCGgG-GCGUGCg -3'
miRNA:   3'- agaGCUUuUUGGCGCGUgUgCGCGCG- -5'
2819 3' -52.9 NC_001491.2 + 140194 0.68 0.940362
Target:  5'- --aCGGAc-ACCGCgGCGCACGCGgucuCGCu -3'
miRNA:   3'- agaGCUUuuUGGCG-CGUGUGCGC----GCG- -5'
2819 3' -52.9 NC_001491.2 + 9524 0.68 0.940362
Target:  5'- uUCUa-GAGGGCCGUGCGcCugGCGCu- -3'
miRNA:   3'- -AGAgcUUUUUGGCGCGU-GugCGCGcg -5'
2819 3' -52.9 NC_001491.2 + 50224 0.68 0.935493
Target:  5'- aUCUCGcuuAAAGCgGCGUAgCGCGagccaguguuCGCGCg -3'
miRNA:   3'- -AGAGCu--UUUUGgCGCGU-GUGC----------GCGCG- -5'
2819 3' -52.9 NC_001491.2 + 123036 0.68 0.935493
Target:  5'- --gCGGcagcGAGACCGCGUGCGC-CGCGg -3'
miRNA:   3'- agaGCU----UUUUGGCGCGUGUGcGCGCg -5'
2819 3' -52.9 NC_001491.2 + 139801 0.68 0.935493
Target:  5'- -aUCGggGAgacGCCGCcgGCGgACGCagaGCGCu -3'
miRNA:   3'- agAGCuuUU---UGGCG--CGUgUGCG---CGCG- -5'
2819 3' -52.9 NC_001491.2 + 122929 0.68 0.934992
Target:  5'- -aUCGggGAGCCGUuguggacguggccGUACGCGC-CGUc -3'
miRNA:   3'- agAGCuuUUUGGCG-------------CGUGUGCGcGCG- -5'
2819 3' -52.9 NC_001491.2 + 101775 0.68 0.925018
Target:  5'- cCUCGcugGAGAGCUGCGUGgACGaGCGUg -3'
miRNA:   3'- aGAGC---UUUUUGGCGCGUgUGCgCGCG- -5'
2819 3' -52.9 NC_001491.2 + 125565 0.68 0.925018
Target:  5'- ---gGggGAugCGCGCcccgaggcggcGCuCGCGCGCu -3'
miRNA:   3'- agagCuuUUugGCGCG-----------UGuGCGCGCG- -5'
2819 3' -52.9 NC_001491.2 + 116645 0.69 0.919411
Target:  5'- gCUCGggGAcGCCuGCGUGCugGCcUGCc -3'
miRNA:   3'- aGAGCuuUU-UGG-CGCGUGugCGcGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.