miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28192 5' -53.6 NC_005891.1 + 33765 0.66 0.699762
Target:  5'- uGCgGUGCGUACgACGgGCG-GCGAGCAu -3'
miRNA:   3'- gUG-CGCGCGUG-UGUaUGCaUGCUCGU- -5'
28192 5' -53.6 NC_005891.1 + 39559 0.66 0.733037
Target:  5'- aCACGaCGgGU-CGCGUACGUugGuuuGGCAa -3'
miRNA:   3'- -GUGC-GCgCGuGUGUAUGCAugC---UCGU- -5'
28192 5' -53.6 NC_005891.1 + 24393 0.66 0.722037
Target:  5'- aACGCGU-CAUGC-UugGUGCGGGUAg -3'
miRNA:   3'- gUGCGCGcGUGUGuAugCAUGCUCGU- -5'
28192 5' -53.6 NC_005891.1 + 23183 0.7 0.486746
Target:  5'- aCAUGUGUGCuCAUAUugGcauUACGGGCGa -3'
miRNA:   3'- -GUGCGCGCGuGUGUAugC---AUGCUCGU- -5'
28192 5' -53.6 NC_005891.1 + 317 0.79 0.124279
Target:  5'- uGCGCGCGUguuccuuuuuuACGCGUACGUGCGcGCGu -3'
miRNA:   3'- gUGCGCGCG-----------UGUGUAUGCAUGCuCGU- -5'
28192 5' -53.6 NC_005891.1 + 366 1 0.00409
Target:  5'- aCACGCGCGCACACAUACGUACGAGg- -3'
miRNA:   3'- -GUGCGCGCGUGUGUAUGCAUGCUCgu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.