miRNA: 3'- guAGGCGGGCAAAG-UAGGU-----UGUA------UCC- -5'
miRNA: 3'- -GuaGGCGGGCAA---AGU--AGGUUGUaucc -5'
miRNA: 3'- guaGGCGGGCaa-AGUAGGUUG----UAUCC- -5'
miRNA: 3'- -GUAGGCGGGCaa-AGuAGGUUGUa----UCC- -5'
miRNA: 3'- -GUAGGCGGGCAAAGUAGGUUGUAUCC- -5'
Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 28194 | 3' | -49.3 | NC_005891.1 | + | 22519 | 0.66 | 0.934926 |
|
Target: 5'- -uUCCGCCUGUUUCgAUUCGagugaACAUaccgugAGGa -3' miRNA: 3'- guAGGCGGGCAAAG-UAGGU-----UGUA------UCC- -5' |
|||||||
| 28194 | 3' | -49.3 | NC_005891.1 | + | 10933 | 0.66 | 0.934926 |
|
Target: 5'- gCcgCCGCCCGUUagcUCGguUCCGAUAg--- -3' miRNA: 3'- -GuaGGCGGGCAA---AGU--AGGUUGUaucc -5' |
|||||||
| 28194 | 3' | -49.3 | NC_005891.1 | + | 23914 | 0.66 | 0.92301 |
|
Target: 5'- --aCUGCUCGcugUCAUCCGAUucguGUGGGc -3' miRNA: 3'- guaGGCGGGCaa-AGUAGGUUG----UAUCC- -5' |
|||||||
| 28194 | 3' | -49.3 | NC_005891.1 | + | 12862 | 0.73 | 0.581411 |
|
Target: 5'- cCAUCCGUCCGcucUCuUCCAACAgugcgAGGc -3' miRNA: 3'- -GUAGGCGGGCaa-AGuAGGUUGUa----UCC- -5' |
|||||||
| 28194 | 3' | -49.3 | NC_005891.1 | + | 1806 | 1.12 | 0.001894 |
|
Target: 5'- cCAUCCGCCCGUUUCAUCCAACAUAGGa -3' miRNA: 3'- -GUAGGCGGGCAAAGUAGGUUGUAUCC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home