miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28194 5' -55.1 NC_005891.1 + 1769 1.07 0.000913
Target:  5'- gUACGUACGUUGGGCGACAUCAGGGCUg -3'
miRNA:   3'- -AUGCAUGCAACCCGCUGUAGUCCCGA- -5'
28194 5' -55.1 NC_005891.1 + 4020 0.78 0.110941
Target:  5'- aGCGUcUGUUGGGgcCGACAUUAGGGCg -3'
miRNA:   3'- aUGCAuGCAACCC--GCUGUAGUCCCGa -5'
28194 5' -55.1 NC_005891.1 + 15605 0.75 0.175446
Target:  5'- -uCGaUACGUUGGGUGGCGUCAaaGGGUa -3'
miRNA:   3'- auGC-AUGCAACCCGCUGUAGU--CCCGa -5'
28194 5' -55.1 NC_005891.1 + 16091 0.7 0.386172
Target:  5'- aUACGcUGCGgaaucuGGCGAUAUCGGGGUc -3'
miRNA:   3'- -AUGC-AUGCaac---CCGCUGUAGUCCCGa -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.