miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2820 3' -46.6 NC_001491.2 + 121398 0.66 0.999912
Target:  5'- cAUGgcuggGCCGGGgucGCCGgagcugGGCu -3'
miRNA:   3'- aUACa----CGGCCCau-UGGCauaaaaUCG- -5'
2820 3' -46.6 NC_001491.2 + 144991 0.66 0.999883
Target:  5'- ----cGCCGGGUGAugaggagcCCGUGgcccGGCg -3'
miRNA:   3'- auacaCGGCCCAUU--------GGCAUaaaaUCG- -5'
2820 3' -46.6 NC_001491.2 + 87890 0.67 0.999746
Target:  5'- --gGUGuuGGGUuuuAACUGUuuaUUGGCg -3'
miRNA:   3'- auaCACggCCCA---UUGGCAuaaAAUCG- -5'
2820 3' -46.6 NC_001491.2 + 13153 0.67 0.999589
Target:  5'- -cUGuUGCCGGGgcGUCGUGgaagUAGCc -3'
miRNA:   3'- auAC-ACGGCCCauUGGCAUaaa-AUCG- -5'
2820 3' -46.6 NC_001491.2 + 26440 0.68 0.999338
Target:  5'- cGUGUuucacaaGCCGGuuggaGUAugCGUAUUUUAGg -3'
miRNA:   3'- aUACA-------CGGCC-----CAUugGCAUAAAAUCg -5'
2820 3' -46.6 NC_001491.2 + 144498 0.68 0.999008
Target:  5'- ---uUGgCGGGUGGCCGg----UGGCg -3'
miRNA:   3'- auacACgGCCCAUUGGCauaaaAUCG- -5'
2820 3' -46.6 NC_001491.2 + 23860 0.68 0.998516
Target:  5'- aUGUGUGCUagGGGUuuCCGUAa---AGCu -3'
miRNA:   3'- -AUACACGG--CCCAuuGGCAUaaaaUCG- -5'
2820 3' -46.6 NC_001491.2 + 142496 0.69 0.997402
Target:  5'- gUAUGgGCCGGGUcACgGUAcccacuagUUGGCa -3'
miRNA:   3'- -AUACaCGGCCCAuUGgCAUaa------AAUCG- -5'
2820 3' -46.6 NC_001491.2 + 144893 0.74 0.958084
Target:  5'- --gGUGCCGGGgacGCCGgcUg--GGCg -3'
miRNA:   3'- auaCACGGCCCau-UGGCauAaaaUCG- -5'
2820 3' -46.6 NC_001491.2 + 146377 0.75 0.929344
Target:  5'- -cUGgGCCGGGUAGCCGgccac-GGCg -3'
miRNA:   3'- auACaCGGCCCAUUGGCauaaaaUCG- -5'
2820 3' -46.6 NC_001491.2 + 120689 1.13 0.013065
Target:  5'- gUAUGUGCCGGGUAACCGUAUUUUAGCg -3'
miRNA:   3'- -AUACACGGCCCAUUGGCAUAAAAUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.