miRNA display CGI


Results 1 - 20 of 40 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2820 5' -56.7 NC_001491.2 + 85876 0.65 0.868781
Target:  5'- cGGCCGCcacacACGCCugcaucacggggggGUugaugGACCCGGCCAa- -3'
miRNA:   3'- aUCGGCG-----UGUGG--------------CA-----UUGGGUCGGUac -5'
2820 5' -56.7 NC_001491.2 + 95632 0.65 0.868781
Target:  5'- gAGCCGUAucaaaacuaaggccCACCGUuACCaCAGUgGUGu -3'
miRNA:   3'- aUCGGCGU--------------GUGGCAuUGG-GUCGgUAC- -5'
2820 5' -56.7 NC_001491.2 + 141669 0.66 0.863477
Target:  5'- cAGCCaGCGCAUCGacGCCguGCgCGUGc -3'
miRNA:   3'- aUCGG-CGUGUGGCauUGGguCG-GUAC- -5'
2820 5' -56.7 NC_001491.2 + 78539 0.66 0.863477
Target:  5'- gGGCCGUACaguuaACC--AGCUCAGCCAg- -3'
miRNA:   3'- aUCGGCGUG-----UGGcaUUGGGUCGGUac -5'
2820 5' -56.7 NC_001491.2 + 116346 0.66 0.855719
Target:  5'- -cGCCGCuggugcgcuacaACGCCGagggGGCCCgGGCCcgGg -3'
miRNA:   3'- auCGGCG------------UGUGGCa---UUGGG-UCGGuaC- -5'
2820 5' -56.7 NC_001491.2 + 85480 0.66 0.85335
Target:  5'- aGGCCGuCGCAUCGUGgauacuggaauuaaACCCAacacGCgCAUGa -3'
miRNA:   3'- aUCGGC-GUGUGGCAU--------------UGGGU----CG-GUAC- -5'
2820 5' -56.7 NC_001491.2 + 118635 0.66 0.847753
Target:  5'- gAGCUaGCACGCCaUGGCC-AGCCAg- -3'
miRNA:   3'- aUCGG-CGUGUGGcAUUGGgUCGGUac -5'
2820 5' -56.7 NC_001491.2 + 147616 0.66 0.847753
Target:  5'- aGGCCGCGCAagccgCGUcGCUgGGCCGc- -3'
miRNA:   3'- aUCGGCGUGUg----GCAuUGGgUCGGUac -5'
2820 5' -56.7 NC_001491.2 + 116846 0.66 0.847753
Target:  5'- -cGCCGCcgugGCCGgcuACCCGGCCc-- -3'
miRNA:   3'- auCGGCGug--UGGCau-UGGGUCGGuac -5'
2820 5' -56.7 NC_001491.2 + 49456 0.66 0.847753
Target:  5'- -cGCgGCGCAgCGgggAACCCcGCCGUc -3'
miRNA:   3'- auCGgCGUGUgGCa--UUGGGuCGGUAc -5'
2820 5' -56.7 NC_001491.2 + 24826 0.66 0.847753
Target:  5'- --uUCGUAC-CCG--ACCCAGCCGUGc -3'
miRNA:   3'- aucGGCGUGuGGCauUGGGUCGGUAC- -5'
2820 5' -56.7 NC_001491.2 + 13944 0.66 0.839588
Target:  5'- gUAGCCGCugguauagcGCGCCGggGCUggCGGCCuUGg -3'
miRNA:   3'- -AUCGGCG---------UGUGGCauUGG--GUCGGuAC- -5'
2820 5' -56.7 NC_001491.2 + 116820 0.66 0.839588
Target:  5'- aGGCCGC-CGCUGccGCggCCAGCCAg- -3'
miRNA:   3'- aUCGGCGuGUGGCauUG--GGUCGGUac -5'
2820 5' -56.7 NC_001491.2 + 141825 0.66 0.839588
Target:  5'- cAGCUccgGCG-ACCccGGCCCAGCCAUGc -3'
miRNA:   3'- aUCGG---CGUgUGGcaUUGGGUCGGUAC- -5'
2820 5' -56.7 NC_001491.2 + 146717 0.66 0.839588
Target:  5'- gGGCCGC-CGuCUccAGCCCGGCCGg- -3'
miRNA:   3'- aUCGGCGuGU-GGcaUUGGGUCGGUac -5'
2820 5' -56.7 NC_001491.2 + 21667 0.66 0.8371
Target:  5'- gGGCCGCgGCACUGgcGCUggucguucucaucaCAGCCGUc -3'
miRNA:   3'- aUCGGCG-UGUGGCauUGG--------------GUCGGUAc -5'
2820 5' -56.7 NC_001491.2 + 92211 0.66 0.831229
Target:  5'- uUGG-CGUACGCCGUAGCCacggGGCUAa- -3'
miRNA:   3'- -AUCgGCGUGUGGCAUUGGg---UCGGUac -5'
2820 5' -56.7 NC_001491.2 + 114589 0.66 0.831229
Target:  5'- cUGGCUGCGCcCCGUGuaccucGCCUgcGGCCGg- -3'
miRNA:   3'- -AUCGGCGUGuGGCAU------UGGG--UCGGUac -5'
2820 5' -56.7 NC_001491.2 + 126566 0.67 0.813963
Target:  5'- cGGCCGCAcCGCUGUAGCUgGGauCCAc- -3'
miRNA:   3'- aUCGGCGU-GUGGCAUUGGgUC--GGUac -5'
2820 5' -56.7 NC_001491.2 + 137622 0.67 0.805073
Target:  5'- cGGCCGC-CGCCGcGGCagCGGCCGc- -3'
miRNA:   3'- aUCGGCGuGUGGCaUUGg-GUCGGUac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.