miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28201 5' -51.9 NC_005891.1 + 23033 0.66 0.838356
Target:  5'- ---uUGGUGaCGGUCGGCaugu-CGCCu -3'
miRNA:   3'- aguuACCAC-GCCAGCUGgaguuGUGG- -5'
28201 5' -51.9 NC_005891.1 + 18794 0.66 0.838356
Target:  5'- aCAGUGGaGCGuUUGACCguaugUCGGCugCa -3'
miRNA:   3'- aGUUACCaCGCcAGCUGG-----AGUUGugG- -5'
28201 5' -51.9 NC_005891.1 + 18332 0.67 0.779483
Target:  5'- gUC-AUGGccaUGCGGUCuaGugCaaauUCAGCACCa -3'
miRNA:   3'- -AGuUACC---ACGCCAG--CugG----AGUUGUGG- -5'
28201 5' -51.9 NC_005891.1 + 33161 0.67 0.769021
Target:  5'- ---uUGGUauuucgcuaccaGUGuGUCGACgUCGACACCc -3'
miRNA:   3'- aguuACCA------------CGC-CAGCUGgAGUUGUGG- -5'
28201 5' -51.9 NC_005891.1 + 27482 0.67 0.767967
Target:  5'- cCAuUGGUGCaGGUCGAgUUCAggguuuucugcguACGCUc -3'
miRNA:   3'- aGUuACCACG-CCAGCUgGAGU-------------UGUGG- -5'
28201 5' -51.9 NC_005891.1 + 21742 0.67 0.747652
Target:  5'- aCAGUaGG-GU-GUCGACgUCGACACCc -3'
miRNA:   3'- aGUUA-CCaCGcCAGCUGgAGUUGUGG- -5'
28201 5' -51.9 NC_005891.1 + 24565 0.68 0.725775
Target:  5'- cUCuuguGUGuuGUGgGuGUCGACgUCGACACCc -3'
miRNA:   3'- -AGu---UAC--CACgC-CAGCUGgAGUUGUGG- -5'
28201 5' -51.9 NC_005891.1 + 36164 0.68 0.692232
Target:  5'- ----cGGcaGUGuGUCGACgUCGACACCg -3'
miRNA:   3'- aguuaCCa-CGC-CAGCUGgAGUUGUGG- -5'
28201 5' -51.9 NC_005891.1 + 8855 0.69 0.646687
Target:  5'- aCAAcuuUGGUGCGGUCaugcCCUUcACAUCa -3'
miRNA:   3'- aGUU---ACCACGCCAGcu--GGAGuUGUGG- -5'
28201 5' -51.9 NC_005891.1 + 27429 0.69 0.635235
Target:  5'- gCGAUGGUGCGGU-GGCCgauagcuuaGGCauGCCa -3'
miRNA:   3'- aGUUACCACGCCAgCUGGag-------UUG--UGG- -5'
28201 5' -51.9 NC_005891.1 + 37983 0.69 0.635235
Target:  5'- aCAAUGGUGUcgacGGUCGAC----ACACCc -3'
miRNA:   3'- aGUUACCACG----CCAGCUGgaguUGUGG- -5'
28201 5' -51.9 NC_005891.1 + 34770 0.7 0.578144
Target:  5'- -aGAUGG-GU-GUCGACgUCGACACCc -3'
miRNA:   3'- agUUACCaCGcCAGCUGgAGUUGUGG- -5'
28201 5' -51.9 NC_005891.1 + 21810 0.7 0.578144
Target:  5'- -aGAUGG-GU-GUCGACgUCGACACCc -3'
miRNA:   3'- agUUACCaCGcCAGCUGgAGUUGUGG- -5'
28201 5' -51.9 NC_005891.1 + 14582 0.71 0.533272
Target:  5'- cUCcuUGGUGUugaGGUCGACC---GCACCa -3'
miRNA:   3'- -AGuuACCACG---CCAGCUGGaguUGUGG- -5'
28201 5' -51.9 NC_005891.1 + 37915 0.72 0.468549
Target:  5'- uUCGG-GGUGU--UCGACCgUCGACACCa -3'
miRNA:   3'- -AGUUaCCACGccAGCUGG-AGUUGUGG- -5'
28201 5' -51.9 NC_005891.1 + 16893 0.72 0.468549
Target:  5'- ----gGGUGU-GUCGACgUCGACACCc -3'
miRNA:   3'- aguuaCCACGcCAGCUGgAGUUGUGG- -5'
28201 5' -51.9 NC_005891.1 + 5361 0.73 0.447872
Target:  5'- -aGAUGGgucaGCaGGUCGGCC-CAAUGCCg -3'
miRNA:   3'- agUUACCa---CG-CCAGCUGGaGUUGUGG- -5'
28201 5' -51.9 NC_005891.1 + 24388 0.77 0.265717
Target:  5'- gUCAugcuUGGUGCGGguagCGuCUUCAGCAUCa -3'
miRNA:   3'- -AGUu---ACCACGCCa---GCuGGAGUUGUGG- -5'
28201 5' -51.9 NC_005891.1 + 14653 1.14 0.000734
Target:  5'- gUCAAUGGUGCGGUCGACCUCAACACCa -3'
miRNA:   3'- -AGUUACCACGCCAGCUGGAGUUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.