miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28202 5' -51.1 NC_005891.1 + 12364 0.67 0.793228
Target:  5'- -cGGCaguccaagGAAUUCCUGCGGAGGAGc -3'
miRNA:   3'- gaCCGgua-----CUUGAGGGUGUUUCCUUc -5'
28202 5' -51.1 NC_005891.1 + 8898 0.67 0.782769
Target:  5'- uUGGUCAacgUGAAUacaaUCCCGCuGAGGGAc -3'
miRNA:   3'- gACCGGU---ACUUG----AGGGUGuUUCCUUc -5'
28202 5' -51.1 NC_005891.1 + 28621 0.73 0.414019
Target:  5'- aUGGCUuguUGAacaggcugACUCCUACAAGGGAAc -3'
miRNA:   3'- gACCGGu--ACU--------UGAGGGUGUUUCCUUc -5'
28202 5' -51.1 NC_005891.1 + 38928 0.75 0.329775
Target:  5'- gUGGCCAUGGggGCUgCCGCAAcaaccagagccuuAGGAGGc -3'
miRNA:   3'- gACCGGUACU--UGAgGGUGUU-------------UCCUUC- -5'
28202 5' -51.1 NC_005891.1 + 23498 1.09 0.001584
Target:  5'- aCUGGCCAUGAACUCCCACAAAGGAAGc -3'
miRNA:   3'- -GACCGGUACUUGAGGGUGUUUCCUUC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.