miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28203 5' -52.6 NC_005891.1 + 1093 0.77 0.207112
Target:  5'- gUGUCGACGUCGACACUauuccCGAUGCAg -3'
miRNA:   3'- -ACAGCUGCAGCUGUGGgu---GUUGUGUg -5'
28203 5' -52.6 NC_005891.1 + 1147 0.66 0.76533
Target:  5'- gUGUCGACGUCGACACagguuuCGAUu--- -3'
miRNA:   3'- -ACAGCUGCAGCUGUGggu---GUUGugug -5'
28203 5' -52.6 NC_005891.1 + 7047 0.72 0.425131
Target:  5'- gUGUCGAUGUCGACACaCCcUAAU-CACc -3'
miRNA:   3'- -ACAGCUGCAGCUGUG-GGuGUUGuGUG- -5'
28203 5' -52.6 NC_005891.1 + 9011 0.72 0.445164
Target:  5'- gUGUCGAUGUCGACAuacuUCCGCu-UugGCg -3'
miRNA:   3'- -ACAGCUGCAGCUGU----GGGUGuuGugUG- -5'
28203 5' -52.6 NC_005891.1 + 11841 0.66 0.76533
Target:  5'- aGUCGugGcUGcCACCCccagugaguggcGCAAUACGCu -3'
miRNA:   3'- aCAGCugCaGCuGUGGG------------UGUUGUGUG- -5'
28203 5' -52.6 NC_005891.1 + 16836 0.75 0.301234
Target:  5'- gUGUCGACGUCGACACaCC-CGA-ACAg -3'
miRNA:   3'- -ACAGCUGCAGCUGUG-GGuGUUgUGUg -5'
28203 5' -52.6 NC_005891.1 + 16889 0.81 0.120719
Target:  5'- gUGUCGACGUCGACACCCucccccuCAgGCu -3'
miRNA:   3'- -ACAGCUGCAGCUGUGGGuguu---GUgUG- -5'
28203 5' -52.6 NC_005891.1 + 21750 0.82 0.107407
Target:  5'- gUGUCGACGUCGACACCCAUcuguuAUuuGCa -3'
miRNA:   3'- -ACAGCUGCAGCUGUGGGUGu----UGugUG- -5'
28203 5' -52.6 NC_005891.1 + 21804 0.79 0.168424
Target:  5'- gUGUCGACGUCGACACCCuacugucccuuccCGACGUAUa -3'
miRNA:   3'- -ACAGCUGCAGCUGUGGGu------------GUUGUGUG- -5'
28203 5' -52.6 NC_005891.1 + 22492 0.69 0.597412
Target:  5'- cGUCcACGUCGGgaACCCcCGACGCAg -3'
miRNA:   3'- aCAGcUGCAGCUg-UGGGuGUUGUGUg -5'
28203 5' -52.6 NC_005891.1 + 24581 0.76 0.271359
Target:  5'- gUGUCGACGUCGACACCCu-------- -3'
miRNA:   3'- -ACAGCUGCAGCUGUGGGuguugugug -5'
28203 5' -52.6 NC_005891.1 + 24635 1.11 0.000982
Target:  5'- gUGUCGACGUCGACACCCACAACACACa -3'
miRNA:   3'- -ACAGCUGCAGCUGUGGGUGUUGUGUG- -5'
28203 5' -52.6 NC_005891.1 + 29282 0.76 0.271359
Target:  5'- gUGUCGACGUCGACACCCu-------- -3'
miRNA:   3'- -ACAGCUGCAGCUGUGGGuguugugug -5'
28203 5' -52.6 NC_005891.1 + 29336 0.8 0.147758
Target:  5'- gUGUCGACGUCGACACCCuCuuuuuACugGa -3'
miRNA:   3'- -ACAGCUGCAGCUGUGGGuGu----UGugUg -5'
28203 5' -52.6 NC_005891.1 + 33180 0.9 0.030742
Target:  5'- gUGUCGACGUCGACACCCaucauuucagcagcuACAGCAUAUa -3'
miRNA:   3'- -ACAGCUGCAGCUGUGGG---------------UGUUGUGUG- -5'
28203 5' -52.6 NC_005891.1 + 33234 0.74 0.342059
Target:  5'- gUGUCGACGUCGACACaCUgguaGCGAaAUACc -3'
miRNA:   3'- -ACAGCUGCAGCUGUG-GG----UGUUgUGUG- -5'
28203 5' -52.6 NC_005891.1 + 34710 0.8 0.131693
Target:  5'- gUGUCGACGUCGACACCCAUc------ -3'
miRNA:   3'- -ACAGCUGCAGCUGUGGGUGuugugug -5'
28203 5' -52.6 NC_005891.1 + 34764 0.79 0.170338
Target:  5'- gUGUCGACGUCGACACCCuACuuaaggagcCAgACa -3'
miRNA:   3'- -ACAGCUGCAGCUGUGGG-UGuu-------GUgUG- -5'
28203 5' -52.6 NC_005891.1 + 36171 0.73 0.368408
Target:  5'- gUGUCGACGUCGACACCgC-CuuUGCGa -3'
miRNA:   3'- -ACAGCUGCAGCUGUGG-GuGuuGUGUg -5'
28203 5' -52.6 NC_005891.1 + 36225 0.76 0.237422
Target:  5'- gUGUCGACGUCGACACaCUGCcgaGCAUc -3'
miRNA:   3'- -ACAGCUGCAGCUGUG-GGUGuugUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.