miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28205 5' -49.5 NC_005891.1 + 1263 0.67 0.863563
Target:  5'- uGGCUAUCAagAGGa-AGCAUacgaccacaUCCUGUc -3'
miRNA:   3'- -CCGAUAGUagUUCggUCGUA---------AGGACG- -5'
28205 5' -49.5 NC_005891.1 + 38637 0.67 0.845507
Target:  5'- uGGCuUGUCAUCGGcuugcucgucGUCAGC-UUgCUGCg -3'
miRNA:   3'- -CCG-AUAGUAGUU----------CGGUCGuAAgGACG- -5'
28205 5' -49.5 NC_005891.1 + 35617 0.68 0.806374
Target:  5'- -aCUAcCAUCAAGUCAGgCucgccUUCCUGCu -3'
miRNA:   3'- ccGAUaGUAGUUCGGUC-Gu----AAGGACG- -5'
28205 5' -49.5 NC_005891.1 + 34063 0.69 0.77476
Target:  5'- aGGUcacgGUCAUCAAaguGCCAGCucaCUUGCc -3'
miRNA:   3'- -CCGa---UAGUAGUU---CGGUCGuaaGGACG- -5'
28205 5' -49.5 NC_005891.1 + 1993 0.73 0.508626
Target:  5'- uGGCcAUCAUUGAGCgUAGCcgUaCCUGCu -3'
miRNA:   3'- -CCGaUAGUAGUUCG-GUCGuaA-GGACG- -5'
28205 5' -49.5 NC_005891.1 + 14050 0.74 0.475389
Target:  5'- aGUUGUUcgCGAGC--GCAUUCCUGCa -3'
miRNA:   3'- cCGAUAGuaGUUCGguCGUAAGGACG- -5'
28205 5' -49.5 NC_005891.1 + 27684 1.15 0.000932
Target:  5'- cGGCUAUCAUCAAGCCAGCAUUCCUGCc -3'
miRNA:   3'- -CCGAUAGUAGUUCGGUCGUAAGGACG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.