miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28206 5' -52.4 NC_005891.1 + 8509 0.71 0.454112
Target:  5'- uGUCGUCUggCAGGGUGAUAuGCAAa- -3'
miRNA:   3'- gCAGCGGGa-GUCCUACUGUuCGUUaa -5'
28206 5' -52.4 NC_005891.1 + 34758 0.66 0.759324
Target:  5'- aCGUCGacaCCCUacuuaAGGAgccagacaaUGGCAAGCAAa- -3'
miRNA:   3'- -GCAGC---GGGAg----UCCU---------ACUGUUCGUUaa -5'
28206 5' -52.4 NC_005891.1 + 19266 0.66 0.726138
Target:  5'- uGUCGUaCUCAGGGUcgGACAaucGGCGAa- -3'
miRNA:   3'- gCAGCGgGAGUCCUA--CUGU---UCGUUaa -5'
28206 5' -52.4 NC_005891.1 + 35115 0.66 0.714847
Target:  5'- cCGcCGCuCCUCagccugaaaaAGGcAUGACAGGCGAg- -3'
miRNA:   3'- -GCaGCG-GGAG----------UCC-UACUGUUCGUUaa -5'
28206 5' -52.4 NC_005891.1 + 39689 0.67 0.703466
Target:  5'- aGUCGCUUgaGGGcGUGACGGGCGAa- -3'
miRNA:   3'- gCAGCGGGagUCC-UACUGUUCGUUaa -5'
28206 5' -52.4 NC_005891.1 + 28937 1.05 0.00208
Target:  5'- uCGUCGCCCUCAGGAUGACAAGCAAUUc -3'
miRNA:   3'- -GCAGCGGGAGUCCUACUGUUCGUUAA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.