miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28207 5' -50.7 NC_005891.1 + 1409 0.66 0.850146
Target:  5'- gGGCAGGUAAGGAUAUcggggCGuuGCa--- -3'
miRNA:   3'- -CCGUUCGUUUCUGUAa----GCggCGgauc -5'
28207 5' -50.7 NC_005891.1 + 11107 0.67 0.791558
Target:  5'- cGGCAgcGGCAAcgGGGCGUUCGgCGgCg-- -3'
miRNA:   3'- -CCGU--UCGUU--UCUGUAAGCgGCgGauc -5'
28207 5' -50.7 NC_005891.1 + 31821 0.67 0.791558
Target:  5'- uGCucGCAcaaaaAAGGCGUUCGCUGCggAGa -3'
miRNA:   3'- cCGuuCGU-----UUCUGUAAGCGGCGgaUC- -5'
28207 5' -50.7 NC_005891.1 + 34936 0.68 0.726231
Target:  5'- cGGCAGGUGAgcgcuugauuGGAgAUUCGCUGCUc-- -3'
miRNA:   3'- -CCGUUCGUU----------UCUgUAAGCGGCGGauc -5'
28207 5' -50.7 NC_005891.1 + 23597 0.68 0.748579
Target:  5'- cGCAguAGC-GAGACug-CGCCGCCa-- -3'
miRNA:   3'- cCGU--UCGuUUCUGuaaGCGGCGGauc -5'
28207 5' -50.7 NC_005891.1 + 17353 0.69 0.666412
Target:  5'- aGGCGAGCGGAGACuaaCGaagucacaacaaCGCCUGu -3'
miRNA:   3'- -CCGUUCGUUUCUGuaaGCg-----------GCGGAUc -5'
28207 5' -50.7 NC_005891.1 + 30549 0.69 0.668742
Target:  5'- ----cGuCAAAGGCGUUgGCCGUCUGGg -3'
miRNA:   3'- ccguuC-GUUUCUGUAAgCGGCGGAUC- -5'
28207 5' -50.7 NC_005891.1 + 27342 0.71 0.540892
Target:  5'- aGGCGGGUccAGAGGCAaaagccguuaUUGCCGCCUAc -3'
miRNA:   3'- -CCGUUCG--UUUCUGUa---------AGCGGCGGAUc -5'
28207 5' -50.7 NC_005891.1 + 33783 0.74 0.383024
Target:  5'- cGGCGAGCAuuGACuccUCGCUGCagUAGg -3'
miRNA:   3'- -CCGUUCGUuuCUGua-AGCGGCGg-AUC- -5'
28207 5' -50.7 NC_005891.1 + 34727 1.11 0.00138
Target:  5'- uGGCAAGCAAAGACAUUCGCCGCCUAGc -3'
miRNA:   3'- -CCGUUCGUUUCUGUAAGCGGCGGAUC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.