miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2821 3' -59.6 NC_001491.2 + 119375 1.07 0.001713
Target:  5'- aGCCGCUACACGCCCACCGCCCAUCAUc -3'
miRNA:   3'- -CGGCGAUGUGCGGGUGGCGGGUAGUA- -5'
2821 3' -59.6 NC_001491.2 + 141598 0.76 0.227636
Target:  5'- uGCCGCUauccccGCGgGCCCugCGCCCGUa-- -3'
miRNA:   3'- -CGGCGA------UGUgCGGGugGCGGGUAgua -5'
2821 3' -59.6 NC_001491.2 + 125477 0.76 0.238793
Target:  5'- cCCGCgg-GCGCCCGCCGCCCGcCGg -3'
miRNA:   3'- cGGCGaugUGCGGGUGGCGGGUaGUa -5'
2821 3' -59.6 NC_001491.2 + 125173 0.75 0.250404
Target:  5'- uCCGCUGCGCGCUCGCuCGCCgCcgCAa -3'
miRNA:   3'- cGGCGAUGUGCGGGUG-GCGG-GuaGUa -5'
2821 3' -59.6 NC_001491.2 + 123108 0.72 0.368238
Target:  5'- cGCCGCUccggaGCGCGUCCGCUGCCUc---- -3'
miRNA:   3'- -CGGCGA-----UGUGCGGGUGGCGGGuagua -5'
2821 3' -59.6 NC_001491.2 + 140032 0.72 0.384373
Target:  5'- gGUCGCUACGCGgCCAgCCccauGCCCGUCu- -3'
miRNA:   3'- -CGGCGAUGUGCgGGU-GG----CGGGUAGua -5'
2821 3' -59.6 NC_001491.2 + 139706 0.71 0.418016
Target:  5'- cGCCGCggcguaccUGCGCGCCCGCgGCCgCAa--- -3'
miRNA:   3'- -CGGCG--------AUGUGCGGGUGgCGG-GUagua -5'
2821 3' -59.6 NC_001491.2 + 49468 0.71 0.45068
Target:  5'- gGCCGUcccggACGCGgcgcagcggggaacCCCGCCGUCCGUCGa -3'
miRNA:   3'- -CGGCGa----UGUGC--------------GGGUGGCGGGUAGUa -5'
2821 3' -59.6 NC_001491.2 + 149406 0.7 0.48096
Target:  5'- cCCGCccaucaACcCGCCCAucaacCCGCCCAUCAa -3'
miRNA:   3'- cGGCGa-----UGuGCGGGU-----GGCGGGUAGUa -5'
2821 3' -59.6 NC_001491.2 + 149802 0.7 0.48096
Target:  5'- cCCGCccaucaACcCGCCCAucaacCCGCCCAUCAa -3'
miRNA:   3'- cGGCGa-----UGuGCGGGU-----GGCGGGUAGUa -5'
2821 3' -59.6 NC_001491.2 + 149766 0.7 0.48096
Target:  5'- cCCGCccaucaACcCGCCCAucaacCCGCCCAUCAa -3'
miRNA:   3'- cGGCGa-----UGuGCGGGU-----GGCGGGUAGUa -5'
2821 3' -59.6 NC_001491.2 + 149622 0.7 0.48096
Target:  5'- cCCGCccaucaACcCGCCCAucaacCCGCCCAUCAa -3'
miRNA:   3'- cGGCGa-----UGuGCGGGU-----GGCGGGUAGUa -5'
2821 3' -59.6 NC_001491.2 + 149586 0.7 0.48096
Target:  5'- cCCGCccaucaACcCGCCCAucaacCCGCCCAUCAa -3'
miRNA:   3'- cGGCGa-----UGuGCGGGU-----GGCGGGUAGUa -5'
2821 3' -59.6 NC_001491.2 + 149550 0.7 0.48096
Target:  5'- cCCGCccaucaACcCGCCCAucaacCCGCCCAUCAa -3'
miRNA:   3'- cGGCGa-----UGuGCGGGU-----GGCGGGUAGUa -5'
2821 3' -59.6 NC_001491.2 + 149730 0.7 0.48096
Target:  5'- cCCGCccaucaACcCGCCCAucaacCCGCCCAUCAa -3'
miRNA:   3'- cGGCGa-----UGuGCGGGU-----GGCGGGUAGUa -5'
2821 3' -59.6 NC_001491.2 + 149694 0.7 0.48096
Target:  5'- cCCGCccaucaACcCGCCCAucaacCCGCCCAUCAa -3'
miRNA:   3'- cGGCGa-----UGuGCGGGU-----GGCGGGUAGUa -5'
2821 3' -59.6 NC_001491.2 + 149658 0.7 0.48096
Target:  5'- cCCGCccaucaACcCGCCCAucaacCCGCCCAUCAa -3'
miRNA:   3'- cGGCGa-----UGuGCGGGU-----GGCGGGUAGUa -5'
2821 3' -59.6 NC_001491.2 + 149514 0.7 0.48096
Target:  5'- cCCGCccaucaACcCGCCCAucaacCCGCCCAUCAa -3'
miRNA:   3'- cGGCGa-----UGuGCGGGU-----GGCGGGUAGUa -5'
2821 3' -59.6 NC_001491.2 + 149442 0.7 0.48096
Target:  5'- cCCGCccaucaACcCGCCCAucaacCCGCCCAUCAa -3'
miRNA:   3'- cGGCGa-----UGuGCGGGU-----GGCGGGUAGUa -5'
2821 3' -59.6 NC_001491.2 + 149478 0.7 0.48096
Target:  5'- cCCGCccaucaACcCGCCCAucaacCCGCCCAUCAa -3'
miRNA:   3'- cGGCGa-----UGuGCGGGU-----GGCGGGUAGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.