miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2821 3' -59.6 NC_001491.2 + 1790 0.68 0.638193
Target:  5'- cGCCGUc-CACGCCCGCggccgcucUGCCCcgCGUu -3'
miRNA:   3'- -CGGCGauGUGCGGGUG--------GCGGGuaGUA- -5'
2821 3' -59.6 NC_001491.2 + 28600 0.68 0.637185
Target:  5'- aGCCGC-GCGCGCUagguaugUAgCGUCCAUCAUc -3'
miRNA:   3'- -CGGCGaUGUGCGG-------GUgGCGGGUAGUA- -5'
2821 3' -59.6 NC_001491.2 + 110577 0.68 0.618035
Target:  5'- uGCC-CUACccagacauaGCGUCCACCaGCCCAUUg- -3'
miRNA:   3'- -CGGcGAUG---------UGCGGGUGG-CGGGUAGua -5'
2821 3' -59.6 NC_001491.2 + 96341 0.68 0.587892
Target:  5'- gGCCGCUggaggcgcaggcAgGCGCCCaggACCGCCaCAUUg- -3'
miRNA:   3'- -CGGCGA------------UgUGCGGG---UGGCGG-GUAGua -5'
2821 3' -59.6 NC_001491.2 + 26667 0.69 0.577898
Target:  5'- cCUGCUuuACGCGCCCAUCGCCg----- -3'
miRNA:   3'- cGGCGA--UGUGCGGGUGGCGGguagua -5'
2821 3' -59.6 NC_001491.2 + 75088 0.69 0.558029
Target:  5'- -gCGCUAUACccaaCCCACCGauCCCGUCAa -3'
miRNA:   3'- cgGCGAUGUGc---GGGUGGC--GGGUAGUa -5'
2821 3' -59.6 NC_001491.2 + 122987 0.69 0.548165
Target:  5'- cCCGUc-CGCGCCCGCC-CCCGUCc- -3'
miRNA:   3'- cGGCGauGUGCGGGUGGcGGGUAGua -5'
2821 3' -59.6 NC_001491.2 + 116696 0.69 0.548165
Target:  5'- gGCCGCUccggggaccaGgGCGCCCagGCCGUCCGccuUCAg -3'
miRNA:   3'- -CGGCGA----------UgUGCGGG--UGGCGGGU---AGUa -5'
2821 3' -59.6 NC_001491.2 + 43051 0.7 0.51893
Target:  5'- --gGCUAUcuuuGCGgCCGCCGCCCGUCc- -3'
miRNA:   3'- cggCGAUG----UGCgGGUGGCGGGUAGua -5'
2821 3' -59.6 NC_001491.2 + 149766 0.7 0.48096
Target:  5'- cCCGCccaucaACcCGCCCAucaacCCGCCCAUCAa -3'
miRNA:   3'- cGGCGa-----UGuGCGGGU-----GGCGGGUAGUa -5'
2821 3' -59.6 NC_001491.2 + 149730 0.7 0.48096
Target:  5'- cCCGCccaucaACcCGCCCAucaacCCGCCCAUCAa -3'
miRNA:   3'- cGGCGa-----UGuGCGGGU-----GGCGGGUAGUa -5'
2821 3' -59.6 NC_001491.2 + 149694 0.7 0.48096
Target:  5'- cCCGCccaucaACcCGCCCAucaacCCGCCCAUCAa -3'
miRNA:   3'- cGGCGa-----UGuGCGGGU-----GGCGGGUAGUa -5'
2821 3' -59.6 NC_001491.2 + 149658 0.7 0.48096
Target:  5'- cCCGCccaucaACcCGCCCAucaacCCGCCCAUCAa -3'
miRNA:   3'- cGGCGa-----UGuGCGGGU-----GGCGGGUAGUa -5'
2821 3' -59.6 NC_001491.2 + 149622 0.7 0.48096
Target:  5'- cCCGCccaucaACcCGCCCAucaacCCGCCCAUCAa -3'
miRNA:   3'- cGGCGa-----UGuGCGGGU-----GGCGGGUAGUa -5'
2821 3' -59.6 NC_001491.2 + 149586 0.7 0.48096
Target:  5'- cCCGCccaucaACcCGCCCAucaacCCGCCCAUCAa -3'
miRNA:   3'- cGGCGa-----UGuGCGGGU-----GGCGGGUAGUa -5'
2821 3' -59.6 NC_001491.2 + 149550 0.7 0.48096
Target:  5'- cCCGCccaucaACcCGCCCAucaacCCGCCCAUCAa -3'
miRNA:   3'- cGGCGa-----UGuGCGGGU-----GGCGGGUAGUa -5'
2821 3' -59.6 NC_001491.2 + 149514 0.7 0.48096
Target:  5'- cCCGCccaucaACcCGCCCAucaacCCGCCCAUCAa -3'
miRNA:   3'- cGGCGa-----UGuGCGGGU-----GGCGGGUAGUa -5'
2821 3' -59.6 NC_001491.2 + 149478 0.7 0.48096
Target:  5'- cCCGCccaucaACcCGCCCAucaacCCGCCCAUCAa -3'
miRNA:   3'- cGGCGa-----UGuGCGGGU-----GGCGGGUAGUa -5'
2821 3' -59.6 NC_001491.2 + 149442 0.7 0.48096
Target:  5'- cCCGCccaucaACcCGCCCAucaacCCGCCCAUCAa -3'
miRNA:   3'- cGGCGa-----UGuGCGGGU-----GGCGGGUAGUa -5'
2821 3' -59.6 NC_001491.2 + 149802 0.7 0.48096
Target:  5'- cCCGCccaucaACcCGCCCAucaacCCGCCCAUCAa -3'
miRNA:   3'- cGGCGa-----UGuGCGGGU-----GGCGGGUAGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.