miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28210 3' -42.6 NC_005891.1 + 883 1.07 0.017604
Target:  5'- cAAUAUAAUGCAAAAGUGACCAACCUGc -3'
miRNA:   3'- -UUAUAUUACGUUUUCACUGGUUGGAC- -5'
28210 3' -42.6 NC_005891.1 + 3411 0.66 0.999332
Target:  5'- ----cGcgGUAGAAGuUGACC-ACCUGa -3'
miRNA:   3'- uuauaUuaCGUUUUC-ACUGGuUGGAC- -5'
28210 3' -42.6 NC_005891.1 + 10934 0.67 0.997389
Target:  5'- ----cAAUGCGAuuGGUGGCCAAaCCg- -3'
miRNA:   3'- uuauaUUACGUUu-UCACUGGUU-GGac -5'
28210 3' -42.6 NC_005891.1 + 23219 0.66 0.998632
Target:  5'- -------cGCGGGAcGUGGCCAGCCc- -3'
miRNA:   3'- uuauauuaCGUUUU-CACUGGUUGGac -5'
28210 3' -42.6 NC_005891.1 + 25529 0.68 0.995321
Target:  5'- --cGUAGUGCuccuGUGAgCCAACCa- -3'
miRNA:   3'- uuaUAUUACGuuuuCACU-GGUUGGac -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.