miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28217 5' -55.6 NC_005891.1 + 33950 0.67 0.531542
Target:  5'- gCAUGGCugcuuGCG-UGGCCAUGUUGUGUg -3'
miRNA:   3'- -GUGUCGc----CGCuGCCGGUAUAACGCAg -5'
28217 5' -55.6 NC_005891.1 + 35990 0.67 0.531542
Target:  5'- uCGCGGCGGCGAgaaaUGGUCGUGUgaaaUGauUCg -3'
miRNA:   3'- -GUGUCGCCGCU----GCCGGUAUA----ACgcAG- -5'
28217 5' -55.6 NC_005891.1 + 11447 0.69 0.427295
Target:  5'- gGCGGUGGCGGUGGCgGUGgcgGUGUg -3'
miRNA:   3'- gUGUCGCCGCUGCCGgUAUaa-CGCAg -5'
28217 5' -55.6 NC_005891.1 + 27839 0.69 0.406959
Target:  5'- uGCAGCGGCuaGugGGUCuuucauugcgcgaagUGCGUCg -3'
miRNA:   3'- gUGUCGCCG--CugCCGGuaua-----------ACGCAG- -5'
28217 5' -55.6 NC_005891.1 + 11327 0.69 0.398431
Target:  5'- gGCGGCGGUGGCGGaaAUAgUGCuGUUu -3'
miRNA:   3'- gUGUCGCCGCUGCCggUAUaACG-CAG- -5'
28217 5' -55.6 NC_005891.1 + 15196 0.71 0.327852
Target:  5'- aACGGCGGCGGuguuuUGGCCGUGgcgaGCGa- -3'
miRNA:   3'- gUGUCGCCGCU-----GCCGGUAUaa--CGCag -5'
28217 5' -55.6 NC_005891.1 + 4618 0.72 0.260026
Target:  5'- cCGCAGUGGUGGUGGCCAUA--GCGg- -3'
miRNA:   3'- -GUGUCGCCGCUGCCGGUAUaaCGCag -5'
28217 5' -55.6 NC_005891.1 + 10890 0.74 0.193167
Target:  5'- gGCGGCGGUGGCGGCgGUGcgGCa-- -3'
miRNA:   3'- gUGUCGCCGCUGCCGgUAUaaCGcag -5'
28217 5' -55.6 NC_005891.1 + 37149 0.75 0.16808
Target:  5'- -gUAGUGGCGACGGCUAgacgGCGUg -3'
miRNA:   3'- guGUCGCCGCUGCCGGUauaaCGCAg -5'
28217 5' -55.6 NC_005891.1 + 10842 0.77 0.130197
Target:  5'- gGCGGCGGCGGCGGCuCAg---GCGa- -3'
miRNA:   3'- gUGUCGCCGCUGCCG-GUauaaCGCag -5'
28217 5' -55.6 NC_005891.1 + 12316 1.1 0.000499
Target:  5'- uCACAGCGGCGACGGCCAUAUUGCGUCg -3'
miRNA:   3'- -GUGUCGCCGCUGCCGGUAUAACGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.