miRNA display CGI


Results 1 - 7 of 7 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28220 3' -51.2 NC_005891.1 + 37941 0.66 0.8633
Target:  5'- uUGUUCCCCGU-CGAGUgaACucuauGGaGCg -3'
miRNA:   3'- gACGAGGGGCAuGCUUAa-UGuu---CC-CG- -5'
28220 3' -51.2 NC_005891.1 + 7236 0.66 0.845664
Target:  5'- uUGUUCCgaaGcGCGAuuggGCGAGGGCg -3'
miRNA:   3'- gACGAGGgg-CaUGCUuaa-UGUUCCCG- -5'
28220 3' -51.2 NC_005891.1 + 18629 0.66 0.817378
Target:  5'- -aGCUCUgCGUccauGUUACGAGGGUc -3'
miRNA:   3'- gaCGAGGgGCAugcuUAAUGUUCCCG- -5'
28220 3' -51.2 NC_005891.1 + 33363 0.66 0.8164
Target:  5'- gUGCUCCUaCGaUugGggUUugGuuaguagauugaaAGGGCg -3'
miRNA:   3'- gACGAGGG-GC-AugCuuAAugU-------------UCCCG- -5'
28220 3' -51.2 NC_005891.1 + 227 0.67 0.776711
Target:  5'- -cGCUCCCCGUAuuCGGA--ACuauGGGa -3'
miRNA:   3'- gaCGAGGGGCAU--GCUUaaUGuu-CCCg -5'
28220 3' -51.2 NC_005891.1 + 16641 0.72 0.502446
Target:  5'- -cGCUCCCCG-ACGAGUUGaaaccugagacagcCAAGGcuGCg -3'
miRNA:   3'- gaCGAGGGGCaUGCUUAAU--------------GUUCC--CG- -5'
28220 3' -51.2 NC_005891.1 + 18526 1.13 0.000894
Target:  5'- gCUGCUCCCCGUACGAAUUACAAGGGCa -3'
miRNA:   3'- -GACGAGGGGCAUGCUUAAUGUUCCCG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.