miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28220 5' -52.6 NC_005891.1 + 24170 0.66 0.783386
Target:  5'- cGACCCaaccaauaauacaaUCGUAGCccGcGACGUGGcGCa -3'
miRNA:   3'- aCUGGG--------------AGCAUUGuaC-CUGCGUCuCG- -5'
28220 5' -52.6 NC_005891.1 + 7293 0.66 0.765584
Target:  5'- aGACCC--GUAAUAaGG-CGguGAGCa -3'
miRNA:   3'- aCUGGGagCAUUGUaCCuGCguCUCG- -5'
28220 5' -52.6 NC_005891.1 + 1014 0.66 0.740825
Target:  5'- cGAUCUuuauuuucucacggUCGgucuGCAUGcGAUGCAGAGUa -3'
miRNA:   3'- aCUGGG--------------AGCau--UGUAC-CUGCGUCUCG- -5'
28220 5' -52.6 NC_005891.1 + 3770 0.67 0.722111
Target:  5'- cGACCCUgCGau-UAUGGuCaCAGAGCg -3'
miRNA:   3'- aCUGGGA-GCauuGUACCuGcGUCUCG- -5'
28220 5' -52.6 NC_005891.1 + 18563 1.12 0.000742
Target:  5'- uUGACCCUCGUAACAUGGACGCAGAGCu -3'
miRNA:   3'- -ACUGGGAGCAUUGUACCUGCGUCUCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.