miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28222 5' -42.2 NC_005891.1 + 4567 0.66 0.999884
Target:  5'- aCCACCAcugcgggucAACCAGugcgccguGUUUAcaCGGAAUCAg -3'
miRNA:   3'- -GGUGGU---------UUGGUU--------UAAGUa-GUCUUAGU- -5'
28222 5' -42.2 NC_005891.1 + 144 0.66 0.999884
Target:  5'- gCCGCCcGACUcgg-UCAUCAGAugCAa -3'
miRNA:   3'- -GGUGGuUUGGuuuaAGUAGUCUuaGU- -5'
28222 5' -42.2 NC_005891.1 + 37223 0.66 0.999844
Target:  5'- aCACCGGAC--GAUUCAaaAGAAUCc -3'
miRNA:   3'- gGUGGUUUGguUUAAGUagUCUUAGu -5'
28222 5' -42.2 NC_005891.1 + 3232 0.66 0.999844
Target:  5'- uCCugCAAcGCCGAAUacaCAUCGuGggUCGc -3'
miRNA:   3'- -GGugGUU-UGGUUUAa--GUAGU-CuuAGU- -5'
28222 5' -42.2 NC_005891.1 + 11674 0.66 0.999844
Target:  5'- aCGCCGAcUCAuAUUCGUUgaacuGGAGUCGg -3'
miRNA:   3'- gGUGGUUuGGUuUAAGUAG-----UCUUAGU- -5'
28222 5' -42.2 NC_005891.1 + 11209 0.66 0.999723
Target:  5'- aCCGCC--GCCuguGUUCG-CGGAGUUAu -3'
miRNA:   3'- -GGUGGuuUGGuu-UAAGUaGUCUUAGU- -5'
28222 5' -42.2 NC_005891.1 + 31177 0.66 0.999723
Target:  5'- aUACCAcGGCgGAAUU--UCAGAGUCAg -3'
miRNA:   3'- gGUGGU-UUGgUUUAAguAGUCUUAGU- -5'
28222 5' -42.2 NC_005891.1 + 39199 0.67 0.999528
Target:  5'- uCCACCu--CUAAAaaaAUCAGAAUCu -3'
miRNA:   3'- -GGUGGuuuGGUUUaagUAGUCUUAGu -5'
28222 5' -42.2 NC_005891.1 + 26669 0.67 0.999528
Target:  5'- aCCGCCGAcACCAAAcca---AGAGUCAa -3'
miRNA:   3'- -GGUGGUU-UGGUUUaaguagUCUUAGU- -5'
28222 5' -42.2 NC_005891.1 + 19707 0.69 0.996504
Target:  5'- gCACCGAACggggaaAAAUUCAUCAagGAAUUg -3'
miRNA:   3'- gGUGGUUUGg-----UUUAAGUAGU--CUUAGu -5'
28222 5' -42.2 NC_005891.1 + 12250 0.7 0.990162
Target:  5'- cCCACgAAGCUAAuagggUCAUUAGggUUg -3'
miRNA:   3'- -GGUGgUUUGGUUua---AGUAGUCuuAGu -5'
28222 5' -42.2 NC_005891.1 + 26145 0.75 0.912605
Target:  5'- aCCGCCAAccauucaucguACuCAAGcUCGUCGGggUCGa -3'
miRNA:   3'- -GGUGGUU-----------UG-GUUUaAGUAGUCuuAGU- -5'
28222 5' -42.2 NC_005891.1 + 1712 0.78 0.781536
Target:  5'- gCACCAa--CAAGUUUAUCGGAGUCGc -3'
miRNA:   3'- gGUGGUuugGUUUAAGUAGUCUUAGU- -5'
28222 5' -42.2 NC_005891.1 + 22633 1.14 0.009062
Target:  5'- cCCACCAAACCAAAUUCAUCAGAAUCAa -3'
miRNA:   3'- -GGUGGUUUGGUUUAAGUAGUCUUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.