miRNA display CGI

Results 1 - 7 of 7 are showing below:
Show page: 1

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
28229	3'	-46.5	NC_005893.1	+	7227	0.66	0.98403
	Target:  5'- aGCACCAGccUUgGUgaucuucucUUGGUCGGAUacagaaagcugugcGGCCu -3' miRNA:   3'- -CGUGGUU--AGgCA---------AACUAGUCUA--------------UCGG- -5'
28229	3'	-46.5	NC_005893.1	+	9927	0.67	0.967828
	Target:  5'- -gGCUAAUCCGUcuauuuUUGAUCGaaucaagAGCCa -3' miRNA:   3'- cgUGGUUAGGCA------AACUAGUcua----UCGG- -5'
28229	3'	-46.5	NC_005893.1	+	36628	0.67	0.967828
	Target:  5'- cGCGCCGuuUuuGga--GUCAGAUAGCUc -3' miRNA:   3'- -CGUGGUu-AggCaaacUAGUCUAUCGG- -5'
28229	3'	-46.5	NC_005893.1	+	14446	0.68	0.95571
	Target:  5'- -uGCCAAUCUGUUcauUCGGcGUAGCUg -3' miRNA:   3'- cgUGGUUAGGCAAacuAGUC-UAUCGG- -5'
28229	3'	-46.5	NC_005893.1	+	25942	0.69	0.929275
	Target:  5'- aGCACCAAUCaGUUUGu----AUAGCCc -3' miRNA:   3'- -CGUGGUUAGgCAAACuagucUAUCGG- -5'
28229	3'	-46.5	NC_005893.1	+	6859	0.75	0.643326
	Target:  5'- gGCACCAGUCuUGUgUGAUUguGGAgAGCCg -3' miRNA:   3'- -CGUGGUUAG-GCAaACUAG--UCUaUCGG- -5'
28229	3'	-46.5	NC_005893.1	+	26304	1.16	0.002058
	Target:  5'- gGCACCAAUCCGUUUGAUCAGAUAGCCu -3' miRNA:   3'- -CGUGGUUAGGCAAACUAGUCUAUCGG- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home