miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2823 5' -55.9 NC_001491.2 + 102520 0.66 0.937806
Target:  5'- aUCUUCGAcgGGGCGAGG-CGGCg--- -3'
miRNA:   3'- cAGGAGCUa-CCUGCUCCuGCUGgucc -5'
2823 5' -55.9 NC_001491.2 + 143852 0.66 0.927862
Target:  5'- cGUUgaUGAUGGGCGGuGGGCGugUAGcGg -3'
miRNA:   3'- -CAGgaGCUACCUGCU-CCUGCugGUC-C- -5'
2823 5' -55.9 NC_001491.2 + 148179 0.66 0.922541
Target:  5'- aUCCUCGGUGGA-GAccGCGuccagcACCAGGa -3'
miRNA:   3'- cAGGAGCUACCUgCUccUGC------UGGUCC- -5'
2823 5' -55.9 NC_001491.2 + 100141 0.66 0.916987
Target:  5'- -cCCUCGAcGGAC-AGGAgGGCUcGGa -3'
miRNA:   3'- caGGAGCUaCCUGcUCCUgCUGGuCC- -5'
2823 5' -55.9 NC_001491.2 + 140275 0.67 0.871755
Target:  5'- cUCCcCGAUGGcCGucGACGGCgAGGn -3'
miRNA:   3'- cAGGaGCUACCuGCucCUGCUGgUCC- -5'
2823 5' -55.9 NC_001491.2 + 145861 0.67 0.871755
Target:  5'- cUCCccaUCGGUGGugGAuccGACccgGGCCAGGg -3'
miRNA:   3'- cAGG---AGCUACCugCUc--CUG---CUGGUCC- -5'
2823 5' -55.9 NC_001491.2 + 147835 0.68 0.864424
Target:  5'- cGUCCUCGG-GGuCGGGGAUcuggugcauCCAGGc -3'
miRNA:   3'- -CAGGAGCUaCCuGCUCCUGcu-------GGUCC- -5'
2823 5' -55.9 NC_001491.2 + 105405 0.69 0.824835
Target:  5'- cGUCCUCGGUGGuC-AGGGgGACCc-- -3'
miRNA:   3'- -CAGGAGCUACCuGcUCCUgCUGGucc -5'
2823 5' -55.9 NC_001491.2 + 145948 0.7 0.743547
Target:  5'- -gCCUCGgcGuagcGCGAGG-CGGCCAGGa -3'
miRNA:   3'- caGGAGCuaCc---UGCUCCuGCUGGUCC- -5'
2823 5' -55.9 NC_001491.2 + 147293 0.71 0.704577
Target:  5'- -gCCUCc-UGGcUGAGGugGGCCGGGg -3'
miRNA:   3'- caGGAGcuACCuGCUCCugCUGGUCC- -5'
2823 5' -55.9 NC_001491.2 + 140249 0.71 0.6847
Target:  5'- aGUCCgagCGG-GGACGGGGACGGgggCGGGc -3'
miRNA:   3'- -CAGGa--GCUaCCUGCUCCUGCUg--GUCC- -5'
2823 5' -55.9 NC_001491.2 + 145037 0.71 0.6847
Target:  5'- -gUCUCGGUaucgcuguCGAGGGCGACCGGGu -3'
miRNA:   3'- caGGAGCUAccu-----GCUCCUGCUGGUCC- -5'
2823 5' -55.9 NC_001491.2 + 147026 0.72 0.624317
Target:  5'- --gCUCGccgccGGGCGAGGACGAUgAGGg -3'
miRNA:   3'- cagGAGCua---CCUGCUCCUGCUGgUCC- -5'
2823 5' -55.9 NC_001491.2 + 145159 0.74 0.515154
Target:  5'- cGUCCaUCGAggacgaGGACGAGGACGACg--- -3'
miRNA:   3'- -CAGG-AGCUa-----CCUGCUCCUGCUGgucc -5'
2823 5' -55.9 NC_001491.2 + 57828 0.75 0.477259
Target:  5'- aGUCCUUGGUGGGCGgcucagaggcGGGACGugUgAGGu -3'
miRNA:   3'- -CAGGAGCUACCUGC----------UCCUGCugG-UCC- -5'
2823 5' -55.9 NC_001491.2 + 118052 1.1 0.003157
Target:  5'- cGUCCUCGAUGGACGAGGACGACCAGGc -3'
miRNA:   3'- -CAGGAGCUACCUGCUCCUGCUGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.