miRNA display CGI


Results 1 - 20 of 23 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2824 3' -61.7 NC_001491.2 + 137652 0.66 0.652112
Target:  5'- cGCCUCGG-GGCgcgCAUccccccccuccgacGGCCGCCGCc- -3'
miRNA:   3'- -CGGAGCCaCCG---GUAc-------------UCGGCGGCGau -5'
2824 3' -61.7 NC_001491.2 + 117867 0.66 0.638164
Target:  5'- cGCC-CGGccgcuggGGCCGccaccccgaaGAGCUGCCGCUc -3'
miRNA:   3'- -CGGaGCCa------CCGGUa---------CUCGGCGGCGAu -5'
2824 3' -61.7 NC_001491.2 + 139640 0.66 0.638164
Target:  5'- cGCCaaaaCGGUGGCCGUGAcCgGCCa--- -3'
miRNA:   3'- -CGGa---GCCACCGGUACUcGgCGGcgau -5'
2824 3' -61.7 NC_001491.2 + 9032 0.66 0.638164
Target:  5'- uCCUCGcUGGCU---GGCCGCgGCUGg -3'
miRNA:   3'- cGGAGCcACCGGuacUCGGCGgCGAU- -5'
2824 3' -61.7 NC_001491.2 + 146529 0.66 0.628195
Target:  5'- gGCCUgGGcgcccUGGUCcccgGAGCgGCCGCg- -3'
miRNA:   3'- -CGGAgCC-----ACCGGua--CUCGgCGGCGau -5'
2824 3' -61.7 NC_001491.2 + 129887 0.67 0.588416
Target:  5'- aGCCgCGGUGGUgGU-AGCCGCgGUg- -3'
miRNA:   3'- -CGGaGCCACCGgUAcUCGGCGgCGau -5'
2824 3' -61.7 NC_001491.2 + 129857 0.67 0.588416
Target:  5'- aGCCgCGGUGGUgGU-AGCCGCgGUg- -3'
miRNA:   3'- -CGGaGCCACCGgUAcUCGGCGgCGau -5'
2824 3' -61.7 NC_001491.2 + 129827 0.67 0.588416
Target:  5'- aGCCgCGGUGGUgGU-AGCCGCgGUg- -3'
miRNA:   3'- -CGGaGCCACCGgUAcUCGGCGgCGau -5'
2824 3' -61.7 NC_001491.2 + 146416 0.67 0.57853
Target:  5'- gGCCUCGGgcuguugcUGGCU---GGCCGCgGCa- -3'
miRNA:   3'- -CGGAGCC--------ACCGGuacUCGGCGgCGau -5'
2824 3' -61.7 NC_001491.2 + 129785 0.67 0.549115
Target:  5'- aGCCgCGGUGGUCGUu-GCUGCUGUg- -3'
miRNA:   3'- -CGGaGCCACCGGUAcuCGGCGGCGau -5'
2824 3' -61.7 NC_001491.2 + 45131 0.67 0.539409
Target:  5'- gGCC--GG-GGCCGcggcggGGGCCGCCGCa- -3'
miRNA:   3'- -CGGagCCaCCGGUa-----CUCGGCGGCGau -5'
2824 3' -61.7 NC_001491.2 + 147754 0.67 0.539409
Target:  5'- cGCCgUCccgGGCCGggGGGCCGCUGCa- -3'
miRNA:   3'- -CGG-AGccaCCGGUa-CUCGGCGGCGau -5'
2824 3' -61.7 NC_001491.2 + 68577 0.68 0.520181
Target:  5'- aGCCaCGGUGuuUGUGAGCCgcGCCGCg- -3'
miRNA:   3'- -CGGaGCCACcgGUACUCGG--CGGCGau -5'
2824 3' -61.7 NC_001491.2 + 145788 0.68 0.510667
Target:  5'- cGCC-CGG-GGCgCAcGaAGCCGCCGCc- -3'
miRNA:   3'- -CGGaGCCaCCG-GUaC-UCGGCGGCGau -5'
2824 3' -61.7 NC_001491.2 + 147501 0.69 0.473386
Target:  5'- aGCCU-GGUGGCCcgGGGUgGCCa--- -3'
miRNA:   3'- -CGGAgCCACCGGuaCUCGgCGGcgau -5'
2824 3' -61.7 NC_001491.2 + 116846 0.69 0.449901
Target:  5'- cGCCgccGUGGCCGgcuacccggcccaGGCCGCCGCUGc -3'
miRNA:   3'- -CGGagcCACCGGUac-----------UCGGCGGCGAU- -5'
2824 3' -61.7 NC_001491.2 + 45257 0.69 0.448121
Target:  5'- gGCCgcggCGGgggccgccgcagauuUGGCCGgggccgcggcggGGGCCGCCGCa- -3'
miRNA:   3'- -CGGa---GCC---------------ACCGGUa-----------CUCGGCGGCGau -5'
2824 3' -61.7 NC_001491.2 + 45191 0.69 0.448121
Target:  5'- gGCCgcggCGGgggccgccgcagauuUGGCCGgggccgcggcggGGGCCGCCGCa- -3'
miRNA:   3'- -CGGa---GCC---------------ACCGGUa-----------CUCGGCGGCGau -5'
2824 3' -61.7 NC_001491.2 + 68890 0.7 0.370767
Target:  5'- aGCUgguugCGGcccGCCAUaGAGCCGCCGCa- -3'
miRNA:   3'- -CGGa----GCCac-CGGUA-CUCGGCGGCGau -5'
2824 3' -61.7 NC_001491.2 + 60139 0.72 0.318327
Target:  5'- gGCCUCGaG-GGCCcUGAgagccgcuuccGCCGCCGCg- -3'
miRNA:   3'- -CGGAGC-CaCCGGuACU-----------CGGCGGCGau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.