miRNA display CGI

Results 1 - 10 of 10 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
2825	3'	-56.7	NC_001491.2	+	124927	0.66	0.866507
	Target:  5'- --cCAGCgagGUGCCguGCCgcgugccGGUCGaGGGg -3' miRNA:   3'- caaGUCG---UAUGGguCGGa------CCAGC-CCC- -5'
2825	3'	-56.7	NC_001491.2	+	147525	0.67	0.851176
	Target:  5'- ---uGGCAUgggucccaggGCCCggggAGCCUGGUggccCGGGGu -3' miRNA:   3'- caagUCGUA----------UGGG----UCGGACCA----GCCCC- -5'
2825	3'	-56.7	NC_001491.2	+	51270	0.67	0.809514
	Target:  5'- --gCGGCA-ACgCCGGCCUGGUCccccuGGGc -3' miRNA:   3'- caaGUCGUaUG-GGUCGGACCAGc----CCC- -5'
2825	3'	-56.7	NC_001491.2	+	115468	0.67	0.808636
	Target:  5'- --gCAGCGgcccCCCGGCCcGGgacggcgcgcgcuUCGGGGa -3' miRNA:   3'- caaGUCGUau--GGGUCGGaCC-------------AGCCCC- -5'
2825	3'	-56.7	NC_001491.2	+	61706	0.68	0.782534
	Target:  5'- --cCGGCuuuCCCAGCg-GGUgGGGGg -3' miRNA:   3'- caaGUCGuauGGGUCGgaCCAgCCCC- -5'
2825	3'	-56.7	NC_001491.2	+	59608	0.68	0.763862
	Target:  5'- -cUCGGCGUAUUCuagGGCCaUGGUCaGGGc -3' miRNA:   3'- caAGUCGUAUGGG---UCGG-ACCAGcCCC- -5'
2825	3'	-56.7	NC_001491.2	+	132528	0.69	0.744725
	Target:  5'- gGUUUGGgGUccGCCUGGCCUGGuuUCGGGu -3' miRNA:   3'- -CAAGUCgUA--UGGGUCGGACC--AGCCCc -5'
2825	3'	-56.7	NC_001491.2	+	144927	0.69	0.735004
	Target:  5'- cUUCAGCAUcgcggcgaGCCCcggAGCCgggcugGGUgcCGGGGa -3' miRNA:   3'- cAAGUCGUA--------UGGG---UCGGa-----CCA--GCCCC- -5'
2825	3'	-56.7	NC_001491.2	+	140602	0.71	0.628272
	Target:  5'- uGUUUAGCGuUGCUCauccacgcgacucggGGCgaGGUCGGGGg -3' miRNA:   3'- -CAAGUCGU-AUGGG---------------UCGgaCCAGCCCC- -5'
2825	3'	-56.7	NC_001491.2	+	116278	1.11	0.001847
	Target:  5'- uGUUCAGCAUACCCAGCCUGGUCGGGGg -3' miRNA:   3'- -CAAGUCGUAUGGGUCGGACCAGCCCC- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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