miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2825 5' -63.1 NC_001491.2 + 39062 0.66 0.60098
Target:  5'- cGCCGgcggagGUCCCUGgaua-CCCGCCGAg -3'
miRNA:   3'- cCGGCa-----CAGGGACgaccgGGGUGGCU- -5'
2825 5' -63.1 NC_001491.2 + 117506 0.66 0.60098
Target:  5'- cGGCCGUGUgggaCUUGCUGGacaugaacucaUCCCaggcuACCGGg -3'
miRNA:   3'- -CCGGCACAg---GGACGACC-----------GGGG-----UGGCU- -5'
2825 5' -63.1 NC_001491.2 + 123288 0.66 0.60098
Target:  5'- cGGCCGcUGaCUCgGCgugGGUCuCCACCGGc -3'
miRNA:   3'- -CCGGC-ACaGGGaCGa--CCGG-GGUGGCU- -5'
2825 5' -63.1 NC_001491.2 + 45330 0.67 0.562357
Target:  5'- uGGCCuG-GUCCUUGgcCUGGUCCUugGCCGGc -3'
miRNA:   3'- -CCGG-CaCAGGGAC--GACCGGGG--UGGCU- -5'
2825 5' -63.1 NC_001491.2 + 115099 0.67 0.552798
Target:  5'- cGGCUGcGUCgaguaccucugCCUGCgccugGGCUCCGCCa- -3'
miRNA:   3'- -CCGGCaCAG-----------GGACGa----CCGGGGUGGcu -5'
2825 5' -63.1 NC_001491.2 + 140415 0.67 0.505836
Target:  5'- aGGCgugugUGUGUUCCcGCgauuccacGCCCCGCCGAg -3'
miRNA:   3'- -CCG-----GCACAGGGaCGac------CGGGGUGGCU- -5'
2825 5' -63.1 NC_001491.2 + 123014 0.68 0.496643
Target:  5'- cGCgGUGUCCgUGCUGGUcggguauagCCCGuCCGc -3'
miRNA:   3'- cCGgCACAGGgACGACCG---------GGGU-GGCu -5'
2825 5' -63.1 NC_001491.2 + 105511 0.68 0.478489
Target:  5'- uGGCuCGUaUCCCaGCUuauaguaaGGaCCCCGCCGGa -3'
miRNA:   3'- -CCG-GCAcAGGGaCGA--------CC-GGGGUGGCU- -5'
2825 5' -63.1 NC_001491.2 + 114464 0.69 0.434613
Target:  5'- aGGCCGaGcCCCUGgUGcuGCCCauCACCGAg -3'
miRNA:   3'- -CCGGCaCaGGGACgAC--CGGG--GUGGCU- -5'
2825 5' -63.1 NC_001491.2 + 116239 1.09 0.000629
Target:  5'- aGGCCGUGUCCCUGCUGGCCCCACCGAc -3'
miRNA:   3'- -CCGGCACAGGGACGACCGGGGUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.