miRNA display CGI


Results 1 - 20 of 300 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28250 3' -44.6 NC_005902.1 + 1143 0.96 0.18493
Target:  5'- gAACCCUUUAAgACCUAAGCUGUAUAc -3'
miRNA:   3'- aUUGGGAAAUUgUGGAUUCGACAUAU- -5'
28250 3' -44.6 NC_005902.1 + 1258 0.77 0.951665
Target:  5'- uUAACUCUUcAACACCUAGGCUaUAUAu -3'
miRNA:   3'- -AUUGGGAAaUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 3002 0.67 0.999989
Target:  5'- uUAAUCCUucaguuuuuaaaauaUUAACAUCUAAGCUaUAUAc -3'
miRNA:   3'- -AUUGGGA---------------AAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 3071 0.72 0.997378
Target:  5'- uUAACgaUUUAACACCUAAGCUaUAUAu -3'
miRNA:   3'- -AUUGggAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 4192 0.72 0.997378
Target:  5'- aUAACCUUUUAAUAUUUAAGCUaUAUAa -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 4609 0.71 0.998792
Target:  5'- -uAUCCUUUAACAUCUAAGCg--AUAu -3'
miRNA:   3'- auUGGGAAAUUGUGGAUUCGacaUAU- -5'
28250 3' -44.6 NC_005902.1 + 5041 0.69 0.999689
Target:  5'- uUAGCCCUUUAACuCCUAAagcGUUGUc-- -3'
miRNA:   3'- -AUUGGGAAAUUGuGGAUU---CGACAuau -5'
28250 3' -44.6 NC_005902.1 + 5112 0.69 0.999689
Target:  5'- -cACUCUUUAACAUCUAAGCa----- -3'
miRNA:   3'- auUGGGAAAUUGUGGAUUCGacauau -5'
28250 3' -44.6 NC_005902.1 + 5645 0.73 0.992887
Target:  5'- uUAACCCUUUAACAaUUAAGCUaUAUAc -3'
miRNA:   3'- -AUUGGGAAAUUGUgGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 6303 0.69 0.999888
Target:  5'- uUAACCCUUUAAUcuuuaagACCUAAGCcaUAUAc -3'
miRNA:   3'- -AUUGGGAAAUUG-------UGGAUUCGacAUAU- -5'
28250 3' -44.6 NC_005902.1 + 7599 0.7 0.999563
Target:  5'- -cACCCUUUAACACCUAAauuauauacucauUUGUAUAu -3'
miRNA:   3'- auUGGGAAAUUGUGGAUUc------------GACAUAU- -5'
28250 3' -44.6 NC_005902.1 + 10057 0.7 0.999497
Target:  5'- uUAACCCUUUAAC-UCUGcGCUGUu-- -3'
miRNA:   3'- -AUUGGGAAAUUGuGGAUuCGACAuau -5'
28250 3' -44.6 NC_005902.1 + 11281 0.73 0.993902
Target:  5'- -uACUCUUUAACACUUAAG-UGUAUAu -3'
miRNA:   3'- auUGGGAAAUUGUGGAUUCgACAUAU- -5'
28250 3' -44.6 NC_005902.1 + 11405 0.75 0.973771
Target:  5'- -cACUCUUUAACACUUAAGCUaUAUAc -3'
miRNA:   3'- auUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 12539 0.69 0.999857
Target:  5'- uUAACCCUUUAAUACCUAAaUUaUAUAc -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUcGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 12822 0.77 0.947039
Target:  5'- uUAACCCUUUAACuCCUAAGUUaUAUAu -3'
miRNA:   3'- -AUUGGGAAAUUGuGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 13179 0.93 0.291216
Target:  5'- uUAACCCUUUAACACCUAAGCUaUAUAc -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 13395 0.67 0.999988
Target:  5'- uUAACCU---AAUACCUAAGCUaUAUAu -3'
miRNA:   3'- -AUUGGGaaaUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 15146 0.73 0.990457
Target:  5'- uUAACCUUUUAACAUgUAAGCUaUAUAc -3'
miRNA:   3'- -AUUGGGAAAUUGUGgAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 15420 0.86 0.566909
Target:  5'- uUAACUCUUUAACACCUAAGCUaUAUAu -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUCGAcAUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.