miRNA display CGI


Results 1 - 20 of 300 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28250 3' -44.6 NC_005902.1 + 169439 1 0.114387
Target:  5'- uUAACCCUUUAACACUUAAGCUGUAUAu -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUCGACAUAU- -5'
28250 3' -44.6 NC_005902.1 + 143015 0.87 0.53389
Target:  5'- uUAACCCUUUAACAUCUAAGCUaUAUAc -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 105939 0.86 0.544828
Target:  5'- uUAACCUUUUAACACCUAAGCUaUAUAc -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 48161 0.66 0.999999
Target:  5'- uUAACCCUUUAACuCCUAAaguauuaucaaugauGCUuUGUAu -3'
miRNA:   3'- -AUUGGGAAAUUGuGGAUU---------------CGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 97172 0.93 0.283818
Target:  5'- uUAACCCUUUAACACCUAAGCUaUAUAu -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 13179 0.93 0.291216
Target:  5'- uUAACCCUUUAACACCUAAGCUaUAUAc -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 91854 0.93 0.291216
Target:  5'- uUAACCCUUUAACACCUAAGCUaUAUAc -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 99553 0.93 0.291216
Target:  5'- uUAACCCUUUAACACCUAAGCUaUAUAc -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 128771 0.88 0.480522
Target:  5'- -uACCCUUUAACACCUAAGCUaUAUAc -3'
miRNA:   3'- auUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 85337 0.87 0.53389
Target:  5'- uUAACCCUUUAACAUCUAAGCUaUAUAc -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 136565 0.87 0.512259
Target:  5'- uUAACCCUUUAACACCUAAGUUaUAUAc -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 48376 0.88 0.459905
Target:  5'- uUAACCCUUUAACACCUAAGUuaUGUAc- -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUCG--ACAUau -5'
28250 3' -44.6 NC_005902.1 + 1143 0.96 0.18493
Target:  5'- gAACCCUUUAAgACCUAAGCUGUAUAc -3'
miRNA:   3'- aUUGGGAAAUUgUGGAUUCGACAUAU- -5'
28250 3' -44.6 NC_005902.1 + 30794 0.87 0.53389
Target:  5'- uUAACCCUUUAACAUCUAAGCUaUAUAc -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 50207 0.93 0.276569
Target:  5'- aUAACCCUUUAACACCUAAGCUaUAUAu -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 54867 0.89 0.420141
Target:  5'- uUAACCCUUUAACACCUAAGCUa---- -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUCGAcauau -5'
28250 3' -44.6 NC_005902.1 + 61617 0.87 0.53389
Target:  5'- uUAACCCUUUAACAUCUAAGCUaUAUAc -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 145942 0.87 0.53389
Target:  5'- uUAACCCUUUAACAUCUAAGCUaUAUAc -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 23253 0.93 0.283818
Target:  5'- uUAACCCUUUAACACCUAAGCUaUAUAu -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUCGAcAUAU- -5'
28250 3' -44.6 NC_005902.1 + 47232 0.93 0.291216
Target:  5'- uUAACCCUUUAACACCUAAGCUaUAUAc -3'
miRNA:   3'- -AUUGGGAAAUUGUGGAUUCGAcAUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.