Results 21 - 40 of 300 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28250 | 3' | -44.6 | NC_005902.1 | + | 43915 | 0.67 | 0.999994 |
Target: 5'- -uACUCUUUAACACCUaAAGCa----- -3' miRNA: 3'- auUGGGAAAUUGUGGA-UUCGacauau -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 151173 | 0.67 | 0.999994 |
Target: 5'- aAGCCUUaggaauuaaagggUUAACACCUAAGUUaUAUAu -3' miRNA: 3'- aUUGGGA-------------AAUUGUGGAUUCGAcAUAU- -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 174460 | 0.67 | 0.999994 |
Target: 5'- uUAAUCUUUUuACAUCUAAGCUaUAUAc -3' miRNA: 3'- -AUUGGGAAAuUGUGGAUUCGAcAUAU- -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 87341 | 0.67 | 0.999993 |
Target: 5'- aUGACaCCUuaagaguuaaaggcUUAAUACCUAAGCUaUAUAu -3' miRNA: 3'- -AUUG-GGA--------------AAUUGUGGAUUCGAcAUAU- -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 116878 | 0.67 | 0.999991 |
Target: 5'- uUAACCCUUUAAUuCCUAAGaCUa---- -3' miRNA: 3'- -AUUGGGAAAUUGuGGAUUC-GAcauau -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 55127 | 0.67 | 0.999991 |
Target: 5'- -uACCCUUUAAauCCUAAGCUauaaacaauuGUGUAu -3' miRNA: 3'- auUGGGAAAUUguGGAUUCGA----------CAUAU- -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 148237 | 0.67 | 0.999991 |
Target: 5'- uUAAUCUUUUAACAUUUAAGCU-UAUAu -3' miRNA: 3'- -AUUGGGAAAUUGUGGAUUCGAcAUAU- -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 23975 | 0.67 | 0.999991 |
Target: 5'- uUAAUCCUUUAACAUCUAAaCUaUAUAa -3' miRNA: 3'- -AUUGGGAAAUUGUGGAUUcGAcAUAU- -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 182934 | 0.67 | 0.999991 |
Target: 5'- ----aUUUUAACACCUAAGCUaUAUAu -3' miRNA: 3'- auuggGAAAUUGUGGAUUCGAcAUAU- -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 98813 | 0.67 | 0.999991 |
Target: 5'- -uACCUUUUAACACUUAuGCUaUAUAc -3' miRNA: 3'- auUGGGAAAUUGUGGAUuCGAcAUAU- -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 3002 | 0.67 | 0.999989 |
Target: 5'- uUAAUCCUucaguuuuuaaaauaUUAACAUCUAAGCUaUAUAc -3' miRNA: 3'- -AUUGGGA---------------AAUUGUGGAUUCGAcAUAU- -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 26257 | 0.67 | 0.999988 |
Target: 5'- -uACCCUUUAAUACUU-AGCUaUAUAc -3' miRNA: 3'- auUGGGAAAUUGUGGAuUCGAcAUAU- -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 144145 | 0.67 | 0.999988 |
Target: 5'- uUAACUCUUUAAUACCUAAuCUaUAUAu -3' miRNA: 3'- -AUUGGGAAAUUGUGGAUUcGAcAUAU- -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 13395 | 0.67 | 0.999988 |
Target: 5'- uUAACCU---AAUACCUAAGCUaUAUAu -3' miRNA: 3'- -AUUGGGaaaUUGUGGAUUCGAcAUAU- -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 102202 | 0.67 | 0.999988 |
Target: 5'- uUAACCCUUUAACuCCUAAGa------ -3' miRNA: 3'- -AUUGGGAAAUUGuGGAUUCgacauau -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 61465 | 0.67 | 0.999988 |
Target: 5'- uUAACUCUUUAACACUaaauuauauaUAAGCaaGUGUAa -3' miRNA: 3'- -AUUGGGAAAUUGUGG----------AUUCGa-CAUAU- -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 90590 | 0.67 | 0.999987 |
Target: 5'- aAGCCUUaggauuuaaagggUUAACACCUAAGCUu---- -3' miRNA: 3'- aUUGGGA-------------AAUUGUGGAUUCGAcauau -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 58224 | 0.67 | 0.999983 |
Target: 5'- -uACUCUUUAACACaUAAGCUaUAUAg -3' miRNA: 3'- auUGGGAAAUUGUGgAUUCGAcAUAU- -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 127469 | 0.67 | 0.999983 |
Target: 5'- -uACUCUUUAACACaUAAGCUaUAUAg -3' miRNA: 3'- auUGGGAAAUUGUGgAUUCGAcAUAU- -5' |
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28250 | 3' | -44.6 | NC_005902.1 | + | 63360 | 0.67 | 0.999976 |
Target: 5'- uUAACUCUUUAACAUCUcuAAGCUa---- -3' miRNA: 3'- -AUUGGGAAAUUGUGGA--UUCGAcauau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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