miRNA display CGI


Results 81 - 100 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28250 5' -45.3 NC_005902.1 + 162754 0.73 0.990143
Target:  5'- -aUAUAUAGCUUAGGUaUUAAAGGa- -3'
miRNA:   3'- acAUAUGUCGAAUCCAgAAUUUCCca -5'
28250 5' -45.3 NC_005902.1 + 71687 0.73 0.990143
Target:  5'- uUGUAUAUAGCUUAGGUgUUAGAa--- -3'
miRNA:   3'- -ACAUAUGUCGAAUCCAgAAUUUccca -5'
28250 5' -45.3 NC_005902.1 + 74813 0.73 0.992595
Target:  5'- -aUAUAUAGCUUAGGUgUUAAAaGGUu -3'
miRNA:   3'- acAUAUGUCGAAUCCAgAAUUUcCCA- -5'
28250 5' -45.3 NC_005902.1 + 180393 0.73 0.993624
Target:  5'- aGUAUAUAGCUUAauUgUUAAAGGGUu -3'
miRNA:   3'- aCAUAUGUCGAAUccAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 63398 0.74 0.987096
Target:  5'- uUGUAUAUAGCUUAGaUgUUAAAGaGGUa -3'
miRNA:   3'- -ACAUAUGUCGAAUCcAgAAUUUC-CCA- -5'
28250 5' -45.3 NC_005902.1 + 143064 0.74 0.985323
Target:  5'- -aUAUAUAGCUUAGaUgUUAAAGGGUa -3'
miRNA:   3'- acAUAUGUCGAAUCcAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 72257 0.74 0.985323
Target:  5'- -aUAUAUAGCUUAGuUgUUAAAGGGUa -3'
miRNA:   3'- acAUAUGUCGAAUCcAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 48290 0.74 0.98337
Target:  5'- -aUAUAUAGCUUAaGUgUUAAAGGGUa -3'
miRNA:   3'- acAUAUGUCGAAUcCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 118111 0.74 0.981227
Target:  5'- gUGUAUAUAGUUagGGGUC--AAAGGGUa -3'
miRNA:   3'- -ACAUAUGUCGAa-UCCAGaaUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 96037 0.74 0.985323
Target:  5'- -aUAUAUAaCUUAGGUgUUAAAGGGUa -3'
miRNA:   3'- acAUAUGUcGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 36357 0.74 0.981227
Target:  5'- -aUAUAUAGCUUAGGU---AAAGGGUu -3'
miRNA:   3'- acAUAUGUCGAAUCCAgaaUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 156432 0.74 0.98337
Target:  5'- aGUAUAUAGCUUAaaUgUUAAAGGGUa -3'
miRNA:   3'- aCAUAUGUCGAAUccAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 76246 0.74 0.985323
Target:  5'- -aUAUAUAaCUUAGGUgUUAAAGGGUg -3'
miRNA:   3'- acAUAUGUcGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 76684 0.74 0.98337
Target:  5'- -aUAUAUAGCUUAaGUgUUAAAGGGUa -3'
miRNA:   3'- acAUAUGUCGAAUcCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 137929 0.75 0.973557
Target:  5'- uUGUAUAUAGCUUAaaUgUUAAAGGGUa -3'
miRNA:   3'- -ACAUAUGUCGAAUccAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 12862 0.75 0.973557
Target:  5'- gUGUAUAUAaCUUAGGagUUAAGGGGUu -3'
miRNA:   3'- -ACAUAUGUcGAAUCCagAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 39612 0.75 0.973557
Target:  5'- aGUGaauUAUAGCUUAGGUgUUAAAGGa- -3'
miRNA:   3'- aCAU---AUGUCGAAUCCAgAAUUUCCca -5'
28250 5' -45.3 NC_005902.1 + 15191 0.75 0.967318
Target:  5'- uUGUAUAUAGCUUAcaUgUUAAAGGGUa -3'
miRNA:   3'- -ACAUAUGUCGAAUccAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 11449 0.75 0.978883
Target:  5'- cGUAUAUAGCUUAGGUgUUAAcucGGUc -3'
miRNA:   3'- aCAUAUGUCGAAUCCAgAAUUuc-CCA- -5'
28250 5' -45.3 NC_005902.1 + 51462 0.75 0.973557
Target:  5'- uUGUAUAUAGCUUAaaUgUUAAAGGGUa -3'
miRNA:   3'- -ACAUAUGUCGAAUccAgAAUUUCCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.